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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00114 ATGGAGATACAACTCATAATACCGTCGCCGGCGATAAGCACCACCATCACTCCATACGTCACCGCACCTTCCACCCCTCACCGCTTCCCCAGTAATTTCTTCTATAGCGCACCCGCCAGCCCCACCCATGCCGAAGACGACGACTTCGCATTCGATTTCAGCGGACAGCTACAGCCACCTTCTATATCCGCAGCCGATGAACTCTTTCACTGCGGCAAGATCAAACCATTAAAGCCCCCCGTCTCCGATGATCCGCCGAAACCCCCCAAAACACGATCAACACAAACATTTGCTAACGAAAATTTCGATTCTCTCACACATGCATTTAACCAAACACCTCGTGGTCATAACCAAACCAGCCAGAACCCACCCAAACGGGGAAGGGAAACCACCGCCAGAAACAGAGAAAAAGTATCAAGGTCTGCTTCACCATTCAGAATCTCCGATATCTTGTCCGACGACGAAGATAACAACGACGACAAAATTTCACCAACTTGGTACAATAAATGGAACCTCAAGAACCTGCTGCTGTTTCGAAGCGCGTCAGAGGGGAGTGGTAGAAAGAGCAAAAACCCTGTTAACAAATACTCAAGAATCAACAAATCCGATGAAGATGTAAAGAATTCGAGCTTTAGAAGCACGGACAGTTGCGGTTCGGTTGTGGGGTCGAATCGAAGAGTGATGAGAAAGGTGTCGGCGCATGAGATACATTACACGGTGAACAGGGCGGTGGCGGAGGAGATGCGGCGGAGGACGTACCTACCGTATAAGTCAGGGTTGTTAGGTTGCTTGGGCTTCCATAACAATGGTGGCGTCTGCGGTGGTCGTGTTAATGAAATTTCAAGAGGGATTACTTCTGTCATGAAACAACGAGGAGCCTAA 882 49.21 MEIQLIIPSPAISTTITPYVTAPSTPHRFPSNFFYSAPASPTHAEDDDFAFDFSGQLQPPSISAADELFHCGKIKPLKPPVSDDPPKPPKTRSTQTFANENFDSLTHAFNQTPRGHNQTSQNPPKRGRETTARNREKVSRSASPFRISDILSDDEDNNDDKISPTWYNKWNLKNLLLFRSASEGSGRKSKNPVNKYSRINKSDEDVKNSSFRSTDSCGSVVGSNRRVMRKVSAHEIHYTVNRAVAEEMRRRTYLPYKSGLLGCLGFHNNGGVCGGRVNEISRGITSVMKQRGA 293
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00114 293 MobiDBLite consensus disorder prediction 128 142 - -
Pdy4g00114 293 MobiDBLite consensus disorder prediction 107 158 - -
Pdy4g00114 293 MobiDBLite consensus disorder prediction 74 95 - -
Pdy4g00114 293 Pfam Protein of unknown function (DUF1645) 65 255 IPR012442 -
Pdy4g00114 293 MobiDBLite consensus disorder prediction 107 127 - -
Pdy4g00114 293 MobiDBLite consensus disorder prediction 183 218 - -
Pdy4g00114 293 PANTHER OS07G0619500 PROTEIN 20 268 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00114 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
132585 Pdy4g00114 Pdy7g01576
132586 Pdy4g00114 Pdy9g01651
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:2004266 Pdy5g00751 Pdy-Chr5:12283466 dispersed
Pdy Pdy-Chr4:2004266 Pdy5g00748 Pdy-Chr5:12256995 wgd
Pdy Pdy-Chr4:2004266 Pdy6g02943 Pdy-Chr6:70777475 wgd
Pdy Pdy-Chr4:2004266 Pdy7g01576 Pdy-Chr7:57877905 wgd
Pdy Pdy-Chr4:2004266 Pdy7g01142 Pdy-Chr7:48860381 wgd
Pdy Pdy-Chr4:2004266 Pdy9g01651 Pdy-Chr9:39098220 wgd