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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00121 ATGGCGAGCTTAAATTTAGCTCCTGAGTTAAGCTTGGATTTCAAACCACTTTTCATCCCCAAAACAATCACTCACTTCCTTGCAGAAGTCTCAAGAATCAGCAGCGTAACAGAGAAGCTGTTGCAGGTTGACGATTTCGTCGATCGATTAGAAACTGAAACGCGAAAAATCGAAGCTTTCGAACGTGAATTCCCTCTATGCATGATCCTCATCAATGACGCAATTGGTGCGTTGAAAGAGGAATCAATCATGTTAAAAAAATCATCAAAAGCCGAAGCGGTTCTTGAAGAATTTATACCACTCAAGAACAGCTGTGATGACGATTATCCAAAAGAAGAAATCATAACAAACCAAAAAGACAATGGTGATAAGAACGATTGGTTGAGCACCACTCATCTCTGGAATGCTAATGAGAACCTTACACAAAAACTGAATTCAGTAGTGCAAAAGATCGAAAAGGTTCAGAAAGCTGAGGAAGAAGGTGCAGAGAAAGTAGTATCTAGTGGAAACTGTGGATTGATTCCATATTCTATGCCAAGTGTTGAATCACAGAAACAAATTGGCAGCACCACGCCTGTGCCATCGGCTTCTAGGAAACGAAGGAGATGCTGGTCCGGCGAGTTGCATAGACGATTTGTGAATGCCCTGCAACAACTTGGAGGTTCACAAGCAGCAACCCCTAAGCAGATTCGAGAACTTATGCAAGTTGATGGTCTCACCAATGATGAAGTGAAGAGCCATTTGCAAAAATACAGGCTCCATACACGGAGAATTCCATCTTCAAATACGAATAGATCTTGTGGCGTTGTGGAGGGAGGATCATGGATGTCTAAATGTAGCAAGTCTCACTCACATTCTCCCGATGGACCCCTTTTAAATGGTGGTAGCAGTATAGATGACGAGGAAGACGAGAAATCTGAAAATCATTGTTGTAATAGTAATCCTTAA 948 41.77 MASLNLAPELSLDFKPLFIPKTITHFLAEVSRISSVTEKLLQVDDFVDRLETETRKIEAFEREFPLCMILINDAIGALKEESIMLKKSSKAEAVLEEFIPLKNSCDDDYPKEEIITNQKDNGDKNDWLSTTHLWNANENLTQKLNSVVQKIEKVQKAEEEGAEKVVSSGNCGLIPYSMPSVESQKQIGSTTPVPSASRKRRRCWSGELHRRFVNALQQLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRIPSSNTNRSCGVVEGGSWMSKCSKSHSHSPDGPLLNGGSSIDDEEDEKSENHCCNSNP 315
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00121 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 256 IPR017930 -
Pdy4g00121 315 MobiDBLite consensus disorder prediction 278 315 - -
Pdy4g00121 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 309 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Pdy4g00121 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 254 IPR006447 GO:0003677(InterPro)
Pdy4g00121 315 Coils Coil 137 157 - -
Pdy4g00121 315 Pfam Myb-like DNA-binding domain 201 252 IPR001005 -
Pdy4g00121 315 FunFam Myb family transcription factor 198 256 - -
Pdy4g00121 315 Coils Coil 43 63 - -
Pdy4g00121 315 Gene3D - 198 256 - -
Pdy4g00121 315 SUPERFAMILY Homeodomain-like 197 257 IPR009057 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00121 K28176 GARP family transcription factor, NIGT1 subfamily
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Event-related genes

Select Gene_1 Gene_2 Event_name
132588 Pdy4g00121 Pdy7g01585
132589 Pdy4g00121 Pdy9g01656
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr2:1220581 Pdy4g00121 Pdy-Chr4:2090806 dispersed
Pdy Pdy-Chr4:2090806 Pdy9g00236 Pdy-Chr9:3957241 dispersed
Pdy Pdy-Chr4:2090806 Pdy7g01585 Pdy-Chr7:58086047 wgd
Pdy Pdy-Chr4:2090806 Pdy9g01656 Pdy-Chr9:39165874 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pdy1g00125 ACH 18 401 G2-like Transcription Factor family AT5G18240 49.153 2.38e-113 334.0
Pdy1g00810 ACH 1 275 G2-like Transcription Factor family AT3G24120 64.286 3.11e-123 352.0
Pdy1g02340 . 15 146 G2-like Transcription Factor family AT2G01060 57.576 2.04e-51 167.0
Pdy1g02759 ACH 44 374 G2-like Transcription Factor family AT4G28610 50.273 1.71e-98 298.0
Pdy1g02990 . 74 211 G2-like Transcription Factor family AT2G40260 52.414 3.68e-34 128.0
Pdy1g03080 ACH 1 263 G2-like Transcription Factor family AT3G46640 52.574 1.64e-75 233.0
Pdy1g03217 . 173 322 G2-like Transcription Factor family AT5G06800 67.105 2.77e-64 207.0
Pdy1g03219 . 313 350 G2-like Transcription Factor family AT4G28610 60.526 1.42e-09 51.6
Pdy1g03407 . 1 335 G2-like Transcription Factor family AT3G10760 59.882 5.86e-93 276.0
Pdy1g04984 ACH 1 76 G2-like Transcription Factor family AT1G14600 73.684 1.04e-32 119.0
Pdy1g05130 ACH 2 323 G2-like Transcription Factor family AT1G25550 40.173 1.09e-68 216.0
Pdy2g00032 ACH 1 314 G2-like Transcription Factor family AT1G25550 52.199 8.25e-105 310.0
Pdy2g00258 . 25 223 G2-like Transcription Factor family AT1G69580 59.701 3.09e-69 217.0
Pdy2g00563 ACH 21 118 G2-like Transcription Factor family AT2G02060 59.804 3.82e-34 122.0
Pdy2g01397 . 5 176 G2-like Transcription Factor family AT2G42660 39.378 4.61e-30 114.0
Pdy2g02279 . 5 257 G2-like Transcription Factor family AT2G01060 67.424 3.07e-100 293.0
Pdy2g02340 . 13 417 G2-like Transcription Factor family AT2G20570 49.306 9.30e-103 309.0
Pdy2g03226 ACH 192 386 G2-like Transcription Factor family AT1G32240 57.692 4.97e-58 191.0
Pdy2g04147 ACH 1 288 G2-like Transcription Factor family AT3G24120 66.0 2.29e-132 375.0
Pdy3g02277 ACH 1 403 G2-like Transcription Factor family AT5G16560 42.291 1.61e-77 244.0
Pdy3g04490 . 1 245 G2-like Transcription Factor family AT5G45580 54.0 1.35e-78 237.0
Pdy3g04516 ACH 176 386 G2-like Transcription Factor family AT1G32240 61.086 5.81e-70 223.0
Pdy4g00121 ACH 6 326 G2-like Transcription Factor family AT2G03500 35.398 2.90e-50 171.0
Pdy4g02238 . 47 172 G2-like Transcription Factor family AT2G40260 62.595 2.74e-39 142.0
Pdy4g02902 ACH 1 263 G2-like Transcription Factor family AT3G46640 53.43 7.08e-75 231.0
Pdy4g02904 ACH 1 263 G2-like Transcription Factor family AT3G46640 53.43 7.08e-75 231.0
Pdy4g03260 . 1 266 G2-like Transcription Factor family AT5G05090 55.245 8.86e-77 232.0
Pdy4g04596 . 1 230 G2-like Transcription Factor family AT2G01060 74.678 1.25e-112 322.0
Pdy5g02396 ACH 56 355 G2-like Transcription Factor family AT4G28610 52.848 3.37e-96 292.0
Pdy5g02975 ACH 1 312 G2-like Transcription Factor family AT3G46640 51.613 1.42e-84 256.0
Pdy6g00237 . 58 355 G2-like Transcription Factor family AT4G28610 50.333 4.80e-79 247.0
Pdy6g00888 ACH 44 201 G2-like Transcription Factor family AT2G40260 56.442 1.18e-46 162.0
Pdy6g02959 . 92 256 G2-like Transcription Factor family AT5G42630 45.54 2.21e-41 145.0
Pdy7g01585 ACH 12 307 G2-like Transcription Factor family AT4G37180 33.602 1.17e-49 169.0
Pdy8g01375 ACH 18 401 G2-like Transcription Factor family AT5G18240 50.0 1.90e-111 328.0
Pdy8g03185 ACH 44 344 G2-like Transcription Factor family AT2G40260 38.111 7.65e-43 152.0
Pdy9g00236 . 1 432 G2-like Transcription Factor family AT2G03500 48.119 2.90e-125 370.0
Pdy9g01656 ACH 6 326 G2-like Transcription Factor family AT2G03500 36.517 8.14e-54 181.0
Pdy9g02191 ACH 14 163 G2-like Transcription Factor family AT3G12730 71.333 6.13e-71 223.0
Pdy9g02584 ACH 1 307 G2-like Transcription Factor family AT1G32240 46.226 5.98e-61 197.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Pdy Myb_DNA-binding 1.3e-05 CL0123 TF GARP-G2-like