AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00155 ATGGAGCTCCGGTCAATTCAGTCGCCTGTCGTCAGCAGCATACCTACGAAAGGTTTTATTGAAAAACACCAACTCATATCCTACAGCCAGCTTAGCATATCGTTAGGCACGAAGAGAATTGTTCGATCAAATGCAATCAAGCTTAATCCTGTTCGATTTAGGGTTCAAGCCTCAGGTGCACCAGTTGTTGGTTCACAGCCTGCGGTAACAAAAGCTAAAGATGGTGAGAAAGATGGGAATGTCATATTTGTTGCAGGGGCAACTGGCAAAGTTGGTTCACGAACAGTAAGGGAACTTTTGAAATTAGGCTTTAATGTTCGAGCTGGGGTAAGAAGTACTCAAAGAGCAGAACCTTTGGTAAAAAGTGTGCAGCAGATGAAGCTTGATGAAGCATTATCAGATGGAAGCCAGCCTATGGAGAAGCTTCAACTTGTGGAGTGTGATTTGGAGAAACCAGAGCAAATTAAGCCGGCATTGGGCAGTGCTTCAACGGTTATATGCTGCATCGGGGCGAGCGAGAAGGAGATATTTGATGTTACCGGGCCCTACCGAATTGACTTTCAAGCCACTAAAAACCTTATTGATGCAGCTGCTGCTGTAAAAGCGAAACACTTTATTTTGGTTACTTCTTTGGGAACAAACAAGTTTGGATTTCCTGCTGCTGTATTAAATTTGTTTTGGGGAGTCTTATGCTGGAAAAGGAAGGCCGAAGAAGCACTGCTTGCTAGTGGGATTCCTTACACTATAGTAAGACCTGGAGGTATGGAGCGTCCTACGGATTCCTTCAAGGAAACACATAATCTTACCCTCTCTACAGAAGACAAATTATTTGGCGGTCTAGTATCGAATCTTCAGGTGGCAGAACTCCTTGCTTTTATGGCACAAAATCCCACTCTTTCATATTGTAAAGTAGTGGAAGTAGTTGCAGAAACAACAGCACCATTAACCCCCATGGGGGACCTACTTGCAAAAATACCACCTAAACGTGCTATACCGTACCAACCCAAGGAAGCAGAAGCTGTCAAAGAACTCGAGCCGGTTCCTAAGACCACCACTGTTACTAGTTCAAGCATTGCCGCTGAAACATCATCCCAGTCAAAAACAGCTGCCACAAGACCTTTGTCCCCATATACCGTCTATGAAGGTCTGAAACCCCCAACATCCCCGATTCCATCAGCACCTGGCAGCAGAAAGGTGGTGGTTGAAGCAGTAATAGCTCCTTCTACTGATTCTGAAACTAGTACAAAGCTGGAAACCACTTCCATAACAACCGAACCTGCACCAGTGGCTGTAGGATCGCCAAAAACCAGACCTCTATCTCCGTACACTGCATATGAAAATCTGAAGCCCCCATCATCGCCATCTCCAAATCCCCCATCATTGTCACCACCACCAACAGTAGTAGTAGACAACGGGTCTCCCATTGCTTCTACACCGGAAAACACCTCAGCTGATGCAATAGTGAAGCAAAGGCCACTTTCACCTTATCCCATGTATGAAAATCTAAAGCCCCCATCATCCCCATCTCCAAACCCCCCATTGGTGTCACCACCACCAACAGCAGTAGTAGACAACGGGTCTCCCATTGCTTCCACACCGGAAAACAGCTTAGCTGACACAAAAGTGAAGTCAAGGCCTCTTTCACCTTACCCCATGTATGAAAACTTGAAGCCTCCAAGTTCTCCTAGTCCATCAACTCCTCAATAA 1707 45.69 MELRSIQSPVVSSIPTKGFIEKHQLISYSQLSISLGTKRIVRSNAIKLNPVRFRVQASGAPVVGSQPAVTKAKDGEKDGNVIFVAGATGKVGSRTVRELLKLGFNVRAGVRSTQRAEPLVKSVQQMKLDEALSDGSQPMEKLQLVECDLEKPEQIKPALGSASTVICCIGASEKEIFDVTGPYRIDFQATKNLIDAAAAVKAKHFILVTSLGTNKFGFPAAVLNLFWGVLCWKRKAEEALLASGIPYTIVRPGGMERPTDSFKETHNLTLSTEDKLFGGLVSNLQVAELLAFMAQNPTLSYCKVVEVVAETTAPLTPMGDLLAKIPPKRAIPYQPKEAEAVKELEPVPKTTTVTSSSIAAETSSQSKTAATRPLSPYTVYEGLKPPTSPIPSAPGSRKVVVEAVIAPSTDSETSTKLETTSITTEPAPVAVGSPKTRPLSPYTAYENLKPPSSPSPNPPSLSPPPTVVVDNGSPIASTPENTSADAIVKQRPLSPYPMYENLKPPSSPSPNPPLVSPPPTAVVDNGSPIASTPENSLADTKVKSRPLSPYPMYENLKPPSSPSPSTPQ 568
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00155 568 MobiDBLite consensus disorder prediction 471 488 - -
Pdy4g00155 568 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 79 328 IPR036291 -
Pdy4g00155 568 MobiDBLite consensus disorder prediction 407 427 - -
Pdy4g00155 568 MobiDBLite consensus disorder prediction 498 519 - -
Pdy4g00155 568 CDD SDR-a5 82 311 - -
Pdy4g00155 568 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 1 567 IPR044719 -
Pdy4g00155 568 FunFam Protein TIC 62, chloroplastic 78 328 - -
Pdy4g00155 568 MobiDBLite consensus disorder prediction 525 542 - -
Pdy4g00155 568 MobiDBLite consensus disorder prediction 344 373 - -
Pdy4g00155 568 MobiDBLite consensus disorder prediction 552 568 - -
Pdy4g00155 568 MobiDBLite consensus disorder prediction 405 568 - -
Pdy4g00155 568 MobiDBLite consensus disorder prediction 451 465 - -
Pdy4g00155 568 MobiDBLite consensus disorder prediction 348 373 - -
Pdy4g00155 568 Gene3D - 80 326 - -
Pdy4g00155 568 Pfam NAD(P)H-binding 86 297 IPR016040 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00155 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr3:89323066 Pdy4g00155 Pdy-Chr4:2448242 dispersed