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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00193 ATGTCGATCCTAGGCTCAAATATGCCGAGCGAGGTTGGTCTGCGATTGCTTCTTTGCCCGCTTGGTTCAAATGTCATCCTAAAAACTGCATGTTGTTCTGTTGGAGTTATTTTACCAGTTTACTCTACTTTTAAAGCAATTGAGATGAATAATACAACTGAGCAGCAAAAGTGGCTTTTATATTGGGCAGCATATGGGACTTTTAGCATTGCAGAAATGTTTGCAGACAAAATCGTATCATGGTTTCCACTTTACCATCACATGAAGTTTGCTTTTCTTGTTTGGCTTCAGCTTCCCACTACCAATGGTGCTAAACAGTTGTACATGAGTCATTTACGTCCATTTCTCTTGAGGCACCAAGCTAACCTTGATCAGATTGTTGAGTTTTTATACAATGAAACGGGTAAATTTGTTAGTGCTCACCAAGGAGAATTTCGGTTCATGAAAGCAATTGTGTTGAAGATTCTAATATCAGCAAAGCATTTCATCAGCGATAGCAGTCAACCTATACCGCCCGTCCCACCACCAGAAGGAAGAGCAATCACCACCCAAAGTGAACAAGTGGAGACCTCAAACTCTGATGATAATGATAACAATAACGAAGATGATGATGATGACGACGGTTATGTAACTTTCCCTGCAACTTAA 648 40.28 MSILGSNMPSEVGLRLLLCPLGSNVILKTACCSVGVILPVYSTFKAIEMNNTTEQQKWLLYWAAYGTFSIAEMFADKIVSWFPLYHHMKFAFLVWLQLPTTNGAKQLYMSHLRPFLLRHQANLDQIVEFLYNETGKFVSAHQGEFRFMKAIVLKILISAKHFISDSSQPIPPVPPPEGRAITTQSEQVETSNSDDNDNNNEDDDDDDGYVTFPAT 215
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00193 215 PANTHER HVA22-LIKE PROTEINS 35 136 IPR004345 -
Pdy4g00193 215 MobiDBLite consensus disorder prediction 180 194 - -
Pdy4g00193 215 MobiDBLite consensus disorder prediction 167 215 - -
Pdy4g00193 215 MobiDBLite consensus disorder prediction 195 209 - -
Pdy4g00193 215 Pfam TB2-DP1, HVA22 family 39 115 IPR004345 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00193 K17279 receptor expression-enhancing protein 5/6
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Event-related genes

Select Gene_1 Gene_2 Event_name
132596 Pdy4g00193 Pdy9g01681
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr2:110185318 Pdy4g00193 Pdy-Chr4:4149264 dispersed
Pdy Pdy-Chr4:4149264 Pdy6g00233 Pdy-Chr6:3720599 dispersed
Pdy Pdy-Chr4:4149264 Pdy9g01681 Pdy-Chr9:39581708 wgd