AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00195 ATGTTGATACTGGACTACCGGAGTAGCACAATTTCTTCAGGGGATTTGTTCAAAGGCAGCATGGACAGTCAATTTCGTAAAGAACAACAAAATCAGGTAGAAGTAGGTGAAGCAGAGGCCGTTATAATTGGGGGTATGGTGTTAGATATACACGCCACTCCTTCATTTCCCCCAAACCCTAGAACTACAACCCCCGGCAAGGTGCGGTATGCAGCAGGAGGTGTGGCAAGAAACATTGCCGAGTGTGTATCAAAGCTCGGAACAAAGCCTTGCATTATAAGTGCATTAGGATTGGACATGGCAGGGAATTTGCTATTGGAGTACTGGAAGTCTGCAGGATTACCGTTAGAAGGTATTCGAATGAGCCATGATATAGAGACTCCAGTTGTATGCATTGTCTTTGATACCGAAGGAGAATCTGCTGCTGCTGTTGCAAGTGTCGAATCATTTGAACGGTTTCTTACACCCGCTTGGATTAAAAAATTCAAATCTAATATAACATCTGCTCCTATTGTGATGATTGATGCAAACTTAAGTCCGCCAGCTCTGGAAGCATCTTTTCAGCTGGCTGTGGAGGTTGGTACCCCAGTTTGGTTTGAGCCCGTATCTGTAGCAAAATCAAAAAGAGTTGTTTCAATTGCCAAGTATGTAACATTTGCTTCCCCTAATGAAGACGAACTGATTGCGATGGCAAATGCTCTATCTTACAAACACACGTTCTCTCCAATTCAAAAGGATAGCAAAGACACAATATCATTTCTATTTCAACAACTAAAACCCGCAATCTGGATTTTGCTTGAAAATGGCATTAAAGTCATCGTTCTAACCCTTGGTTCAAAAGGGGTATTGTTATGCTCTAAAGGGCGCCTTGATTTTCAACATATCGGGCCAAAAAGAAACAATACTTCACACGATATTGGCAAACGGCTGCACGAAACCATAAATCAAGTTTGCCCACCGGACCGGTTTTTTAGTGCATTAAGGCTTGAAGAAAGCTCTAGTAGCAGCCCATATGTGGTGCATTTTCCATCTGTATCATGTGCATCTGTTGCGAGGTTAACGGGAGCTGGTGACTGTTTGGTTGGTGGCTCGATTGCTTCAATTTGTGCAGGTTTAGATGTTATGCAAAGTATTGCAGTTGGAATTGCAGCTGCTAAAGCTGCTGTTGAAGCGGAGACAAATGTACCTTCCGGGTATAGTTTGGATCAAATTGCAGCCGATGCAAGATCTGTGTACATGGGTGCCAAGGTTGTTTTTTGTCAATCGATGTTATAA 1275 42.82 MLILDYRSSTISSGDLFKGSMDSQFRKEQQNQVEVGEAEAVIIGGMVLDIHATPSFPPNPRTTTPGKVRYAAGGVARNIAECVSKLGTKPCIISALGLDMAGNLLLEYWKSAGLPLEGIRMSHDIETPVVCIVFDTEGESAAAVASVESFERFLTPAWIKKFKSNITSAPIVMIDANLSPPALEASFQLAVEVGTPVWFEPVSVAKSKRVVSIAKYVTFASPNEDELIAMANALSYKHTFSPIQKDSKDTISFLFQQLKPAIWILLENGIKVIVLTLGSKGVLLCSKGRLDFQHIGPKRNNTSHDIGKRLHETINQVCPPDRFFSALRLEESSSSSPYVVHFPSVSCASVARLTGAGDCLVGGSIASICAGLDVMQSIAVGIAAAKAAVEAETNVPSGYSLDQIAADARSVYMGAKVVFCQSML 424
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00195 424 PRINTS Ribokinase signature 212 227 IPR002139 GO:0016301(InterPro)
Pdy4g00195 424 PRINTS Ribokinase signature 273 284 IPR002139 GO:0016301(InterPro)
Pdy4g00195 424 PRINTS Ribokinase signature 42 63 IPR002139 GO:0016301(InterPro)
Pdy4g00195 424 Gene3D - 36 416 IPR029056 -
Pdy4g00195 424 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 73 97 IPR002173 GO:0016301(InterPro)
Pdy4g00195 424 SUPERFAMILY Ribokinase-like 40 396 IPR029056 -
Pdy4g00195 424 PANTHER ZGC:136858 30 406 - -
Pdy4g00195 424 CDD YeiC-kinase-like 41 377 - -
Pdy4g00195 424 Pfam pfkB family carbohydrate kinase 40 289 IPR011611 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00195 - -