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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00211 ATGCATCTTCTCCTTCATCCTTGTCAGCCACTCTGCTATTCCTCCAACCACCGTCCTCCACCACACCGCCACCTTCAATTCCCAACATCTCACCGGAAAACCCTCCGGTATCTCAAATCCCTCGGTATCATTCAACCGGAATCCACAACACCCCCGGAATCACTCTCTCAAATCCTCACAACCATTGATTACTTCAAATCCAAAGGCTTTTCAGAACCTGATTTCCCAAGAATCGCCTTTCTTTCCCCAAACCTCTTCACTCCAACCTTCAATCCAACCACAATTGAGCCTGTTTTCGATTTCTTAACGGTTGATTTAGCTGCCTCGCCGGAGGACACCCGTGGGTTGATCCTAAAACGCCCACAAATTCTTGAATCCAGCCCGGAATTCTGCTTGAAACCAACACTAAGTTACCTTAAAAACTTGGGTATTAAGGGGTTGAATGTTCCCACAACTTTGAATGCTCATTTACTTGATACGCGAGTCGATAAATTCGAAGAGAAAATGAGGTTCTTAAGGGATGTGGGGTTTTCCGGCGAGGAATCGAGGAGGGTTTGTGGGCGGTTTCCGGCGATTTTCGGGTATGGGATAGAGAATAATTTGAGGCCAAAGTTTGTGTATTTGGTGAGGGAGATGAAGAGGAATGGGATAGAGGAAGTGAATAAGTTTCCACAGTATTTTGGGTTTAGTTTGGAGAATAGAATAAAGGTTAGACATTTGCATTTGAAGTTGAGGAATGTTGATGGTGAGGTACCATTGAATAGGATGTTGTTGTGGAGTGATCAAAGATTCTTTAAAAAATGGAAATAA 810 43.83 MHLLLHPCQPLCYSSNHRPPPHRHLQFPTSHRKTLRYLKSLGIIQPESTTPPESLSQILTTIDYFKSKGFSEPDFPRIAFLSPNLFTPTFNPTTIEPVFDFLTVDLAASPEDTRGLILKRPQILESSPEFCLKPTLSYLKNLGIKGLNVPTTLNAHLLDTRVDKFEEKMRFLRDVGFSGEESRRVCGRFPAIFGYGIENNLRPKFVYLVREMKRNGIEEVNKFPQYFGFSLENRIKVRHLHLKLRNVDGEVPLNRMLLWSDQRFFKKWK 269
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00211 269 SMART mt-12 114 145 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Pdy4g00211 269 SMART mt-12 217 248 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Pdy4g00211 269 SMART mt-12 76 109 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Pdy4g00211 269 SMART mt-12 183 215 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Pdy4g00211 269 SMART mt-12 150 178 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Pdy4g00211 269 Gene3D Transcription termination factor 3, mitochondrial 13 269 IPR038538 -
Pdy4g00211 269 Pfam mTERF 90 264 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Pdy4g00211 269 PANTHER CGI-12 PROTEIN-RELATED 56 267 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00211 K15031 mitochondrial transcription termination factor family protein
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Pdy mTERF 3.1e-31 No_clan TR mTERF