AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00249 ATGGCGGCTGCTGCTTCTTCTTCATCTCACCTTCAACTTCAATCCCTTTCTTTCGCCAAATCTCTAAACCAAACCCCAAACCCGATCACACCCAAAACCCTAATTTCCTTCAAACCCAATTCTAAGTCACTAGCTATCCGAGCAGTCATATCGCAAAAACCTCCAGAAACACAAACATTTCAGCATTGTTTTACCAAAAAAGACGATGGGTATCTCTACTGTGAGGGTCTTAAGGTTCAAGAAGTCATGGAGGCCGTTGAGAAACGGCCATTTTATCTTTACAGTAAGCCTCAGATAACTAGAAATGTTGAGGCTTATAAGGATGCTCTGGAGGGATTGAATTCAATTATCGGATATGCGATTAAAGCCAATAATAATTTCATGATTCTACAGCATTTGAGGAGTTTGGGTTGTGGGGCTGTTTTGGTTAGTGGGAATGAGCTCAGATTGGCACTTCGTGCTGGTTTTGATCCTACAAGGTGTATTTTTAATGGAAATGGAAAGATTTTGGAGGATCTTGTTCTTGCTGCTCAAGAAGGCGTATTTATAAACATAGACAGTGAATTCGATTTAGATAATATTGTATCGGCTGCAAGAATTGCTGGAAAGAAAGTCAATGTATTGCTTCGTATTAATCCAGATGTTGATCCTCAGGTACATCCTTATGTTGCAACCGGGAACAAGAATTCTAAATTTGGTATAAGAAACGAGAAATTGCAATGGTTTTTAGATGCAGTGAAGTCGTATCCTGATGAACTGAAGCTAGTCGGGGCTCATTGCCATCTTGGATCCACCATTACCAAGGTTGACATTTTCAGAGATGCTGCAGCAATTATGGTGAAATTTATTGACGAAATTCGATCTCAAGGGTTTGATATTAATTATTTGAACATTGGAGGTGGTCTTGGGATCGATTATTATCATACTGGTACAGTACTTCCTACACCAAGAGATCTTATCGACACAGTGAGGGATCTAGTCAAGTCTCGAAACCTTAATCTAATAATTGAACCCGGGAGGTCGTTGATTGCTAATACTTGCTGCCTTGTTAATCGTGTCACGGGTGTAAAAACAAATGGCACGAAAAACTTTATTGTGATTGATGGAAGCATGGCTGAGCTTATTCGTCCTAGTCTATATGATGCTTATCAGCATATAGAACTGATTTCACCTCCACCACCCGATTCTGCTGTTTCAACTTTTGATGTTGTGGGCCCGGTTTGCGAATCTGCCGATTTCTTGGGAAAAAGCAGGGAGCTACCCGCGCCTGCCAGGGGTACTGGGCTTGTAGTTCATGATGCAGGTGCCTACTGCATGAGTATGGCTTCAACTTACAATCTCAAGATGCGCCCACCTGAATACTGGGTTGAAGATGATGGATCCGTAGCCAAAATCAGGCACGGGGAGACTTTTGAAGATCATATGAGATTCTTCGAGGGACTCTCGATCTAA 1452 41.74 MAAAASSSSHLQLQSLSFAKSLNQTPNPITPKTLISFKPNSKSLAIRAVISQKPPETQTFQHCFTKKDDGYLYCEGLKVQEVMEAVEKRPFYLYSKPQITRNVEAYKDALEGLNSIIGYAIKANNNFMILQHLRSLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKILEDLVLAAQEGVFINIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKSYPDELKLVGAHCHLGSTITKVDIFRDAAAIMVKFIDEIRSQGFDINYLNIGGGLGIDYYHTGTVLPTPRDLIDTVRDLVKSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELISPPPPDSAVSTFDVVGPVCESADFLGKSRELPAPARGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSVAKIRHGETFEDHMRFFEGLSI 483
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00249 483 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 139 151 IPR000183 GO:0003824(InterPro)
Pdy4g00249 483 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 435 448 IPR000183 GO:0003824(InterPro)
Pdy4g00249 483 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 334 353 IPR000183 GO:0003824(InterPro)
Pdy4g00249 483 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 119 137 IPR000183 GO:0003824(InterPro)
Pdy4g00249 483 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 252 265 IPR000183 GO:0003824(InterPro)
Pdy4g00249 483 SUPERFAMILY PLP-binding barrel 89 345 IPR029066 -
Pdy4g00249 483 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 98 344 IPR022644 GO:0003824(InterPro)
Pdy4g00249 483 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 79 475 IPR009006 GO:0003824(InterPro)
Pdy4g00249 483 PRINTS Diaminopimelate decarboxylase signature 137 154 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Pdy4g00249 483 PRINTS Diaminopimelate decarboxylase signature 445 467 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Pdy4g00249 483 PRINTS Diaminopimelate decarboxylase signature 225 234 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Pdy4g00249 483 PRINTS Diaminopimelate decarboxylase signature 362 380 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Pdy4g00249 483 PANTHER DIAMINOPIMELATE DECARBOXYLASE 56 478 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Pdy4g00249 483 FunFam Diaminopimelate decarboxylase 96 341 - -
Pdy4g00249 483 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 288 303 IPR022657 -
Pdy4g00249 483 Hamap Diaminopimelate decarboxylase [lysA]. 76 479 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Pdy4g00249 483 NCBIfam diaminopimelate decarboxylase 66 475 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Pdy4g00249 483 Gene3D Alanine racemase 96 341 IPR029066 -
Pdy4g00249 483 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 345 435 IPR022643 GO:0003824(InterPro)
Pdy4g00249 483 SUPERFAMILY Alanine racemase C-terminal domain-like 321 476 IPR009006 GO:0003824(InterPro)
Pdy4g00249 483 FunFam Diaminopimelate decarboxylase 323 475 - -
Pdy4g00249 483 CDD PLPDE-III-DapDC 90 456 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Pdy4g00249 483 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 119 137 IPR022653 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00249 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]