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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00282 ATGGACTTCACTGTACAACGATTCTTACTAACAATCCTCTCCATCTCACTGCTTGTTGATCATTCTGCTTACTCAAAACCACCTGATTTCGTAAATGCTGGTGCTCTGTTTTCATTTGATTCCGTCATCGGACGAGCTGCAAAGCCAGCCATGGAAGCCGCTGTAATCGATGTGAATAATGATTCTACGATTCTCGCTGGTACAAAGATGAAGTTGCTCATGGAGGACACAAACTGCAGCGTCTTCGCGAGTTCGATTTCAGCATTTCAGATGCTTGAGAGAGACGTTGTGGCAATAATCGGTCCCCAATCATCCACAGCAGCCCATATGATTTCTCAGATTGCAAATGGTGTTAAGGTGCCGATAATTTCATATGCTGCCACGGACCCTACTTTATCTTCCCTCCAATTTCCATTCTTCTTCCGAACCACACAAAGTGACTCGTATCAAATGGCAGCCATGGCTAATTTAATAGATTTTTACGGGTGGAAAGAGGTGATTGCAATTTACATAGATGACGAGTATGGGAGAAATGGAGTGTTTTCCTTAGATGATGAAGTAGAGAAAAGAATGTCAAAGATTTCTTATAAGTTACCTTTGCCAACTAATTATGATCTTAAAGATCTCACTGATGTCCTTAATATTTCCATCCCGCTTGGTCCACGTGTTTATATTATTCACATCAATCCTGATCCCGCTTTGAGAATCTTTCAAGTAGCAAACAAGCTTAATATGATGACTAGTGATTATGTATGGCTAACAACAGACTGGCTTTGTACAACTTTAGCTTCATTTAGCTCAAAAGATCAACCTTTTTTAAAGCTTATTGAGGGCGTTGTTGGTCTTTGTCAGCATACTCAACAAGCATCACATGATAAGAACTTTGGGTCAAATGTCTACGCGTCATATGCTTATGATACTATATGGGCGGTAGCACGTACAATTGATACGTTTCTTAATCAAGAAAAAAACCTAACATTTTCGTTTGTTGGGTCACAATTTGGGAAACTCAAGATTTTTGATGGAGGGGAACATTTTCTCAATATATTATCCAATACAAATTTTTTAGGTTTGACCGGCCCGATTCGCTTCAATGGAGATAGAAACCTGGCTCCCCGTGGCTATCGAGTTTTTAATATGGTCAAGTTAGCAATTCACAATGTGGGTTATTGGTCAAACCATTCTGGCCTCTCGGTTGACCCGCCTGAATTTCTCAAAGTGAATAAAAGTAGGTCGTTGAATTTAAATGAGAAATTGGGTGTGATTACTTGGCCTGGTGGAAAGAATGATCGACCTCGTGGATGGGTAATTGGTGACACAGAAAGACCATTAAGAATTGGGATACCAAAACGGGCTATTTTTGTTGAATTTGTGACGGAATTAAACAATCATACAATAGAAGGATACTGTATTGATGTGTTTTTAGAGGCACTTCAGTTAGTTCCTTATGAGCTTCCTTATAGATTTGTGCCATTTGGTGATGGTCTGTCCAACCCTAGTTATGATGAACTTGTGAGGCTCGTTGCAGATGATGTATTTGATGGTGCGGTTGGAGATATTGCAATTGTGACAAATAGAACAAATATTGTGGATTACACGCAGCCTTATGCAACAACTGGTCTCGTGATAGTGGTTCCTATCAATAATTCAAAAGCGAGCACTTGGGTATTTCTTAGACCGTTTACTGTAGAAATGTGGTGTGCCACTGCAGCAGCTTTTGTATTAATTGCTTTGGTTATCTGGCTTCTTGAGCATCGTGTTAACGATGACTTCCGCGGTCCACTTAGGAGACAACTCGTTACTATTTTCTTGTTTAGTTTCTCAACTCTTTTCAAGAAAAACCAGGAAGATACGGTTAGTCCCCTTGGACGAATGGTGATGGTGGTTTGGCTTTTCCTCCTATTGGTAATAACATCGAGCTACACTGCAAGCTTAACATCAATTCTTACGGTACAACAACTTTCATCACCCATCACAGGAATCGATAGTTTAGTGGCTAGTCATCTACCAATAGGTTACCAAGTTGGATCATTTGCACATACTTATTTGGCTGAAAGTCTTAATGTGCCTCGATCTAGCCTTGTTCAACTTGGGTCACCAGATGATTATGAAAAAGCATTGCGGTTGGGGCCACACAATGGTGGGGTGGCAGCCATTGTTGATGAACTTACTTATGTTGAGTTGTTTCTATCAAATCGTCCTGATTTTGGGATCGTTGGTCAACCATTTACTAGAAGCGGATGGGGTTTTGCTTTCAAGAGAGATTCACCCCTTGCAACCACACTATCCCTTGCAATCCTACAACTCTCTGAAAATGGAAAGCTTCAAGAAATCCATGACAAATGGCTCTGCAAGAAAGGCTGTTCGAGTGCCATGGGGAGTGATTCCGAGCCTAACCAGCTGCAAATGAGCAGTTTCTGGGGTTTATACATATTTTGTGGTGTTTTCTCACTCACTGCTTTTCTTTTATTTATTTTACAAACGATTCGTCAGTATATTTATTACAAACAAAAGCAAATGCTGGACCCTCGCTCCCCCTCGTTCCCAGCATCATCAAGCAGGGGCTGCCATGGTGTGTTTCTTAATTTTTGTAAATTTATTGACGAAAAAGAAGAAGCGATCAAGCACATGTTCAAGAAAGATGACCATCCTCAAGATTCTCAAACTGTTTAG 2673 40.55 MDFTVQRFLLTILSISLLVDHSAYSKPPDFVNAGALFSFDSVIGRAAKPAMEAAVIDVNNDSTILAGTKMKLLMEDTNCSVFASSISAFQMLERDVVAIIGPQSSTAAHMISQIANGVKVPIISYAATDPTLSSLQFPFFFRTTQSDSYQMAAMANLIDFYGWKEVIAIYIDDEYGRNGVFSLDDEVEKRMSKISYKLPLPTNYDLKDLTDVLNISIPLGPRVYIIHINPDPALRIFQVANKLNMMTSDYVWLTTDWLCTTLASFSSKDQPFLKLIEGVVGLCQHTQQASHDKNFGSNVYASYAYDTIWAVARTIDTFLNQEKNLTFSFVGSQFGKLKIFDGGEHFLNILSNTNFLGLTGPIRFNGDRNLAPRGYRVFNMVKLAIHNVGYWSNHSGLSVDPPEFLKVNKSRSLNLNEKLGVITWPGGKNDRPRGWVIGDTERPLRIGIPKRAIFVEFVTELNNHTIEGYCIDVFLEALQLVPYELPYRFVPFGDGLSNPSYDELVRLVADDVFDGAVGDIAIVTNRTNIVDYTQPYATTGLVIVVPINNSKASTWVFLRPFTVEMWCATAAAFVLIALVIWLLEHRVNDDFRGPLRRQLVTIFLFSFSTLFKKNQEDTVSPLGRMVMVVWLFLLLVITSSYTASLTSILTVQQLSSPITGIDSLVASHLPIGYQVGSFAHTYLAESLNVPRSSLVQLGSPDDYEKALRLGPHNGGVAAIVDELTYVELFLSNRPDFGIVGQPFTRSGWGFAFKRDSPLATTLSLAILQLSENGKLQEIHDKWLCKKGCSSAMGSDSEPNQLQMSSFWGLYIFCGVFSLTAFLLFILQTIRQYIYYKQKQMLDPRSPSFPASSSRGCHGVFLNFCKFIDEKEEAIKHMFKKDDHPQDSQTV 890
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00282 890 CDD PBP1-GABAb-receptor-plant 34 401 IPR044440 -
Pdy4g00282 890 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 854 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Pdy4g00282 890 Pfam Ligand-gated ion channel 784 815 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Pdy4g00282 890 FunFam Glutamate receptor 680 787 - -
Pdy4g00282 890 PIRSF IGluLR-plant 2 889 IPR017103 -
Pdy4g00282 890 FunFam Glutamate receptor 554 684 - -
Pdy4g00282 890 SUPERFAMILY Periplasmic binding protein-like I 34 426 IPR028082 -
Pdy4g00282 890 SUPERFAMILY Periplasmic binding protein-like II 430 785 - -
Pdy4g00282 890 Gene3D - 50 372 - -
Pdy4g00282 890 SMART GluR-14 445 785 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Pdy4g00282 890 CDD GluR-Plant 442 783 - -
Pdy4g00282 890 Gene3D - 554 687 - -
Pdy4g00282 890 Gene3D - 146 397 - -
Pdy4g00282 890 Gene3D - 712 748 - -
Pdy4g00282 890 Pfam Receptor family ligand binding region 47 381 IPR001828 -
Pdy4g00282 890 Gene3D - 749 782 - -
Pdy4g00282 890 Gene3D - 440 553 - -
Pdy4g00282 890 FunFam Glutamate receptor 439 554 - -
Pdy4g00282 890 FunFam Glutamate receptor 146 305 - -
Pdy4g00282 890 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 104 132 - -
Pdy4g00282 890 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 235 258 - -
Pdy4g00282 890 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Pdy4g00282 890 Pfam Bacterial extracellular solute-binding proteins, family 3 499 562 IPR001638 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00282 K05387 glutamate receptor, ionotropic, plant
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:5831543 Pdy8g00049 Pdy-Chr8:846745 dispersed
Pdy Pdy-Chr4:5809844 Pdy4g00282 Pdy-Chr4:5831543 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pdy1g01554 . 312 378 Ion Channels gene family AT5G57940 52.239 3.88e-17 75.5
Pdy1g01695 . 20 431 Ion Channels gene family AT4G18160 64.2 1.13e-177 501.0
Pdy1g02284 ACH 47 357 Ion Channels gene family AT5G55630 50.482 1.12e-116 339.0
Pdy1g02883 . 1 854 Ion Channels gene family AT2G29120 35.181 5.45e-175 529.0
Pdy1g02884 . 33 807 Ion Channels gene family AT5G48410 39.679 0.0 563.0
Pdy1g02885 . 28 816 Ion Channels gene family AT5G48410 36.849 4.42e-167 504.0
Pdy1g02886 ACH 643 819 Ion Channels gene family AT3G07520 39.674 2.97e-38 138.0
Pdy1g02887 ACH 24 665 Ion Channels gene family AT2G29120 37.252 6.06e-147 449.0
Pdy1g03499 . 90 344 Ion Channels gene family AT5G40890 25.651 9.16e-06 47.4
Pdy1g03962 . 74 735 Ion Channels gene family AT3G02850 64.502 0.0 909.0
Pdy1g05311 . 572 713 Ion Channels gene family AT3G02850 31.724 1.83e-08 56.2
Pdy2g00693 . 725 795 Ion Channels gene family AT4G22200 61.972 1.89e-24 93.6
Pdy2g00796 . 7 434 Ion Channels gene family AT4G18160 58.701 4.21e-172 487.0
Pdy2g00935 . 83 636 Ion Channels gene family AT5G53130 58.289 0.0 697.0
Pdy2g00937 ACH 86 715 Ion Channels gene family AT5G53130 57.098 0.0 756.0
Pdy2g02353 . 2 730 Ion Channels gene family AT4G03560 64.12 0.0 983.0
Pdy2g02844 . 29 662 Ion Channels gene family AT4G32650 59.779 0.0 755.0
Pdy2g03507 . 551 715 Ion Channels gene family AT2G25600 33.133 7.65e-13 65.1
Pdy2g03571 ACH 53 634 Ion Channels gene family AT2G28260 59.278 0.0 746.0
Pdy2g03900 ACH 1 676 Ion Channels gene family AT2G28260 69.308 0.0 993.0
Pdy3g00359 ACH 50 358 Ion Channels gene family AT5G55630 54.693 3.06e-122 355.0
Pdy3g02263 ACH 16 827 Ion Channels gene family AT3G02850 68.21 0.0 1181.0
Pdy3g03055 . 310 347 Ion Channels gene family AT5G55630 68.421 1.68e-13 60.1
Pdy3g04231 ACH 30 662 Ion Channels gene family AT4G32650 60.095 0.0 749.0
Pdy4g00281 . 56 932 Ion Channels gene family AT1G05200 63.739 0.0 1197.0
Pdy4g00282 . 28 900 Ion Channels gene family AT2G32400 55.416 0.0 986.0
Pdy4g01105 ACH 68 358 Ion Channels gene family AT5G55630 65.636 3.99e-141 402.0
Pdy4g02041 . 1 745 Ion Channels gene family AT3G17700 59.524 0.0 860.0
Pdy4g02393 ACH 46 751 Ion Channels gene family AT3G07520 34.075 1.31e-128 401.0
Pdy4g02396 . 140 580 Ion Channels gene family AT5G48400 34.146 2.94e-80 261.0
Pdy4g02397 . 43 103 Ion Channels gene family AT3G04110 47.541 1.64e-15 67.0
Pdy4g02399 . 46 843 Ion Channels gene family AT3G07520 34.606 1.87e-152 467.0
Pdy4g02401 ACH 679 816 Ion Channels gene family AT3G07520 35.714 1.68e-24 97.8
Pdy4g02402 . 142 807 Ion Channels gene family AT5G48410 33.774 5.29e-124 388.0
Pdy4g02403 . 46 843 Ion Channels gene family AT3G07520 34.483 1.00e-151 465.0
Pdy4g02521 ACH 7 856 Ion Channels gene family AT2G26650 66.667 0.0 1214.0
Pdy4g02603 . 7 765 Ion Channels gene family AT5G33280 74.835 0.0 1152.0
Pdy4g02617 ACH 499 713 Ion Channels gene family AT5G37500 27.854 2.62e-12 68.2
Pdy4g02679 ACH 1 717 Ion Channels gene family AT5G57940 74.588 0.0 1115.0
Pdy4g02742 . 1 719 Ion Channels gene family AT4G30360 66.848 0.0 996.0
Pdy4g02746 . 453 833 Ion Channels gene family AT2G29110 32.908 1.65e-55 196.0
Pdy4g03128 . 5 82 Ion Channels gene family AT3G04110 35.897 3.29e-11 58.5
Pdy4g04230 . 1 677 Ion Channels gene family AT5G46240 54.486 0.0 800.0
Pdy4g04316 . 34 862 Ion Channels gene family AT2G29120 35.37 1.59e-156 483.0
Pdy5g00297 . 39 730 Ion Channels gene family AT4G30560 65.229 0.0 967.0
Pdy5g00464 . 1 700 Ion Channels gene family AT5G14870 61.111 0.0 872.0
Pdy5g02045 . 79 405 Ion Channels gene family AT4G01840 63.222 3.85e-146 419.0
Pdy5g02517 . 41 815 Ion Channels gene family AT5G48410 42.516 0.0 611.0
Pdy5g02521 . 54 825 Ion Channels gene family AT3G07520 39.7 0.0 547.0
Pdy6g01726 . 23 898 Ion Channels gene family AT3G51480 58.57 0.0 1108.0
Pdy6g01943 ACH 21 778 Ion Channels gene family AT3G27170 78.524 0.0 1217.0
Pdy6g02080 . 21 699 Ion Channels gene family AT5G14870 68.122 0.0 967.0
Pdy6g02456 . 57 352 Ion Channels gene family AT5G55630 51.815 2.58e-110 323.0
Pdy6g02492 . 147 816 Ion Channels gene family AT5G48410 36.047 2.61e-129 403.0
Pdy6g03850 . 61 874 Ion Channels gene family AT2G29120 44.511 0.0 695.0
Pdy7g00610 . 60 930 Ion Channels gene family AT2G17260 62.971 0.0 1109.0
Pdy7g01256 . 9 795 Ion Channels gene family AT4G22200 63.126 0.0 1048.0
Pdy7g01949 . 15 902 Ion Channels gene family AT2G29120 44.347 0.0 776.0
Pdy7g01950 . 6 895 Ion Channels gene family AT2G29120 42.14 0.0 717.0
Pdy7g01951 . 595 790 Ion Channels gene family AT2G24720 52.792 2.42e-62 206.0
Pdy7g01952 . 27 543 Ion Channels gene family AT2G24720 43.691 3.15e-139 424.0
Pdy7g02203 . 34 821 Ion Channels gene family AT2G24720 28.055 2.79e-98 325.0
Pdy7g02204 . 45 839 Ion Channels gene family AT2G29120 30.779 9.86e-127 401.0
Pdy7g02205 . 7 843 Ion Channels gene family AT5G27100 28.835 4.00e-109 355.0
Pdy7g02427 ACH 7 856 Ion Channels gene family AT2G26650 67.671 0.0 1221.0
Pdy7g02557 ACH 3 717 Ion Channels gene family AT5G57940 75.934 0.0 1115.0
Pdy7g02650 . 58 932 Ion Channels gene family AT1G05200 66.025 0.0 1228.0
Pdy8g00049 . 13 924 Ion Channels gene family AT1G42540 64.294 0.0 1230.0
Pdy8g01685 ACH 16 824 Ion Channels gene family AT3G02850 67.975 0.0 1162.0
Pdy8g01686 ACH 20 824 Ion Channels gene family AT3G02850 58.446 0.0 957.0
Pdy8g01823 . 1 888 Ion Channels gene family AT3G51480 58.751 0.0 1119.0
Pdy8g02243 . 54 726 Ion Channels gene family AT5G15410 57.101 0.0 749.0
Pdy8g02384 ACH 1 778 Ion Channels gene family AT3G27170 69.77 0.0 1105.0
Pdy8g02502 ACH 1 678 Ion Channels gene family AT2G28260 70.513 0.0 1014.0
Pdy8g02698 ACH 30 637 Ion Channels gene family AT2G28260 55.008 0.0 721.0
Pdy8g03442 . 1 715 Ion Channels gene family AT5G53130 75.795 0.0 1108.0
Pdy9g00433 ACH 524 713 Ion Channels gene family AT5G37500 30.928 9.80e-13 69.3
Pdy9g00670 ACH 31 717 Ion Channels gene family AT5G57940 77.299 0.0 1101.0
Pdy9g00852 . 496 873 Ion Channels gene family AT2G17260 34.783 1.39e-57 203.0
Pdy9g00867 . 443 833 Ion Channels gene family AT2G29110 35.589 7.85e-60 209.0
Pdy9g00869 . 496 873 Ion Channels gene family AT2G17260 35.294 1.37e-58 206.0
Pdy9g00871 . 384 785 Ion Channels gene family AT5G11210 31.436 1.55e-55 196.0
Pdy9g00885 . 478 892 Ion Channels gene family AT2G17260 32.634 2.20e-58 206.0
Pdy9g01182 . 1 791 Ion Channels gene family AT5G26240 81.523 0.0 1237.0
Pdy9g01310 . 9 779 Ion Channels gene family AT5G49890 77.173 0.0 1188.0
Pdy9g01986 . 80 692 Ion Channels gene family AT5G54250 77.561 0.0 995.0
Pdy9g01987 . 90 692 Ion Channels gene family AT5G54250 72.697 0.0 909.0
Pdy9g02113 ACH 46 358 Ion Channels gene family AT5G55630 54.313 2.62e-119 347.0
Pdy9g02114 . 46 358 Ion Channels gene family AT5G55630 53.994 2.45e-118 344.0
Pdy9g02303 . 46 726 Ion Channels gene family AT5G15410 72.635 0.0 988.0
Pdy9g02336 . 1 725 Ion Channels gene family AT2G24610 65.494 0.0 972.0
Pdy9g03288 ACH 1 714 Ion Channels gene family AT5G53130 64.295 0.0 938.0