AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00296 ATGTCAATGGCATTCACAACTTCAACAAAATTACATTTCATCTTCCTCGTTATCATCTCACTTCTATGTATTTTCGCATCGTCGAAAGTGGAACAACTAGGCGGCCTCAAACGAACCGCGATGACCCTTTACTTCCAAGACTATTTTGGCGGGTCCAATGCCACCATGAAACCAGTCACGTTCTCATCCGAGGCATGGTCTTTCAAACAATTCGGGACTATATTTTGCACAGACGACCTAATAACTGAGAGTCCTAACCAAGACTCGGCCCAAGTGGCCAGAGCCCAAGGTATCTATGTGACAGCGGCTTTGGATGGGTCCACCTCTCATGTTTTGATATCCATAGTGTTCACTAACGATGAGTTTAGTGGTAGCACGTTGGAGGTGCAAGGTGCTAGCAAGCAGTTTGACAAGGTGAGAGAAGTGGCGATAGTTGGCGGCACCGGGAAATTTCGGTTAGCAAGAGGTTATGTAACTTTTGAGACAATTCATCTTGATTATTCGTTAGCTTACTCAATCATTGAAGGGAACTTCACTGTGTGGCATTACTAA 552 44.75 MSMAFTTSTKLHFIFLVIISLLCIFASSKVEQLGGLKRTAMTLYFQDYFGGSNATMKPVTFSSEAWSFKQFGTIFCTDDLITESPNQDSAQVARAQGIYVTAALDGSTSHVLISIVFTNDEFSGSTLEVQGASKQFDKVREVAIVGGTGKFRLARGYVTFETIHLDYSLAYSIIEGNFTVWHY 183
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00296 183 Gene3D - 37 178 IPR044859 -
Pdy4g00296 183 PANTHER NUCLEOPORIN-RELATED 13 177 IPR004265 -
Pdy4g00296 183 Pfam Dirigent-like protein 39 180 IPR004265 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00296 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr2:103685082 Pdy4g00296 Pdy-Chr4:6135285 dispersed
Pdy Pdy-Chr4:6135285 Pdy2g02545 Pdy-Chr2:87242669 transposed