AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pdy4g00302 | ATGGGTAGTGTTTCCAAAGCTAGCTTGCTCTTGTTGTTTCTTTGGTTTGTTCTCTCACCTACTGCATATTCGGGTCCTAATGATGGATTACTAAGAGTTGGACTTAAGAAGAGAAAAATTAACCAATTGAACCAACCTGGTGGGCATGCTGGCTCTAGTGAAGTAAACATTCGAAGAAAGTTTGGTGATAATTTAAGGGATTCGGATAGTGACGTGATTGCTCTAAACAACTATATGGATGCTCAGTATTATGGTGAGATTGGTTTAGGCACTCCTCCTCAGAAGTTCACAGTGATTTTTGACACTGGAAGTTCTAATCTGTGGGTGCCTTCTGCAAAATGCTACTTCTCAGTTGCTTGCCTTTTTCACTCAAAGTATAAGTCTAGCCACTCAAGTTCTTATAAGAAAAATGGGAAATCTGCCGCAATTCAATATGGAACTGGCTCTATATCTGGTTTCTTTAGCCAAGATTCTATCAAACTTGGTGATCTTGTTGTTAAGGAGCAGGATTTTATAGAAGCAACCAAAGAGCCTGGTATCACTTTCTTGGCAGCCAAATTCGATGGTATACTTGGCCTTGGGTTTCAAGAGATCTCTGTTGGGGATGCTGTTCCCGTTTGGTACAACATGGTGAAACAAGGTCTTGTTCAAGAACCTGTATTTTCATTTTGGCTTAATCGGAATACTGAAGAGGATGAAGGGGGTGAACTTGTGTTTGGTGGGGTTGATAAAAATCATTTCAAGGGTGAACACACATATGTTCCTGTGACTGAAAAAGGCTATTGGCAATTCGAAATGGGTGATGTCCTAATTGGTGATGAAACGACCGGTTTTTGCACTGGTGGTTGTGCGGCAATTGCCGATTCTGGAACTTCTTTGCTGGCTGGTCCAACGACTGTTATTACTCAAATCAATCAAGCCATTGGTGCAGTGGGGGTCATGAGCCAACAATGCAAGACATTGGTTGATCAGTATGGAAAGACTATAATTGAGATGCTGTTATCTGAGACACAACCTGAGAAAATCTGTTCTCAAATGAAATTATGCACCTTTGATGGCTCTCGTGATACTAGTATGATAATTGAGAGCGTGGTGGACAAGAATAATGGCAAATCTTCTGGACTACGCGATGAAATGTGTACCTTCTGTGAGATGGCAGTTGTTTGGATGCAAAACCAGCTCAAGCGAAATGAGACTGAAGATCAAATAATTAACTATGTTGATCAGCTGTGTGAACGCTTGCCAAGTCCAATGGGAGAATCTGGTGTCGACTGCAACGGTCTATCATCCATGCCTAATATTGCATTTACCATTGGTGGTAAAACTTTTGACCTCTCTCCAGAACAGTATGTCCTGAAAGTGGGCGAAGGAGCAGCAGCACAATGCATCAGTGGATTTACTGCTCTTGATGTGGCACCTCCTCGTGGACCTCTATGGATCCTTGGAGATATTTTCATGGGTAAATACCATACAGTGTTCGACTATGGTAAATTACGAGTTGGGTTTGCAGAGGCAGTTTGA | 1521 | 41.95 | MGSVSKASLLLLFLWFVLSPTAYSGPNDGLLRVGLKKRKINQLNQPGGHAGSSEVNIRRKFGDNLRDSDSDVIALNNYMDAQYYGEIGLGTPPQKFTVIFDTGSSNLWVPSAKCYFSVACLFHSKYKSSHSSSYKKNGKSAAIQYGTGSISGFFSQDSIKLGDLVVKEQDFIEATKEPGITFLAAKFDGILGLGFQEISVGDAVPVWYNMVKQGLVQEPVFSFWLNRNTEEDEGGELVFGGVDKNHFKGEHTYVPVTEKGYWQFEMGDVLIGDETTGFCTGGCAAIADSGTSLLAGPTTVITQINQAIGAVGVMSQQCKTLVDQYGKTIIEMLLSETQPEKICSQMKLCTFDGSRDTSMIIESVVDKNNGKSSGLRDEMCTFCEMAVVWMQNQLKRNETEDQIINYVDQLCERLPSPMGESGVDCNGLSSMPNIAFTIGGKTFDLSPEQYVLKVGEGAAAQCISGFTALDVAPPRGPLWILGDIFMGKYHTVFDYGKLRVGFAEAV | 506 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pdy4g00302 | 506 | ProSiteProfiles | Saposin B type domain profile. | 376 | 417 | IPR008139 | - | |
| Pdy4g00302 | 506 | FunFam | Vacuolar aspartic proteinase | 397 | 505 | - | - | |
| Pdy4g00302 | 506 | PANTHER | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED | 24 | 505 | IPR001461 | GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(PANTHER)|GO:0006508(InterPro) | |
| Pdy4g00302 | 506 | Pfam | Saposin-like type B, region 1 | 379 | 415 | IPR007856 | GO:0006629(InterPro) | |
| Pdy4g00302 | 506 | CDD | phytepsin | 73 | 504 | IPR033869 | GO:0004190(InterPro) | |
| Pdy4g00302 | 506 | PRINTS | Pepsin (A1) aspartic protease family signature | 285 | 296 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Pdy4g00302 | 506 | PRINTS | Pepsin (A1) aspartic protease family signature | 235 | 248 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Pdy4g00302 | 506 | PRINTS | Pepsin (A1) aspartic protease family signature | 479 | 494 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Pdy4g00302 | 506 | PRINTS | Pepsin (A1) aspartic protease family signature | 89 | 109 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Pdy4g00302 | 506 | ProSiteProfiles | Peptidase family A1 domain profile. | 83 | 503 | IPR033121 | - | |
| Pdy4g00302 | 506 | Pfam | Saposin-like type B, region 2 | 316 | 349 | IPR008138 | - | |
| Pdy4g00302 | 506 | SMART | sapb-4 | 378 | 462 | IPR008139 | - | |
| Pdy4g00302 | 506 | SMART | sapb-4 | 277 | 349 | IPR008139 | - | |
| Pdy4g00302 | 506 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 98 | 109 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Pdy4g00302 | 506 | SUPERFAMILY | Saposin | 314 | 415 | IPR011001 | - | |
| Pdy4g00302 | 506 | Gene3D | Acid Proteases | 31 | 241 | IPR021109 | - | |
| Pdy4g00302 | 506 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 285 | 296 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Pdy4g00302 | 506 | Gene3D | - | 313 | 415 | - | - | |
| Pdy4g00302 | 506 | FunFam | Lysosomal aspartic protease | 69 | 311 | - | - | |
| Pdy4g00302 | 506 | Gene3D | Acid Proteases | 242 | 505 | IPR021109 | - | |
| Pdy4g00302 | 506 | ProSiteProfiles | Saposin B type domain profile. | 313 | 353 | IPR008139 | - | |
| Pdy4g00302 | 506 | Pfam | Eukaryotic aspartyl protease | 82 | 505 | IPR033121 | - | |
| Pdy4g00302 | 506 | SUPERFAMILY | Acid proteases | 10 | 505 | IPR021109 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pdy4g00302 | K08245 | phytepsin [EC:3.4.23.40] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 132621 | Pdy4g00302 | Pdy9g01743 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pdy | Pdy-Chr1:65092510 | Pdy4g00302 | Pdy-Chr4:6187865 | dispersed | |
| Pdy | Pdy-Chr2:2224440 | Pdy4g00302 | Pdy-Chr4:6187865 | dispersed | |
| Pdy | Pdy-Chr2:69878291 | Pdy4g00302 | Pdy-Chr4:6187865 | dispersed | |
| Pdy | Pdy-Chr4:6187865 | Pdy4g01996 | Pdy-Chr4:59305703 | dispersed | |
| Pdy | Pdy-Chr4:6187865 | Pdy9g01743 | Pdy-Chr9:40421904 | wgd |