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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00309 ATGGCATTAAACAGGGCTGGATCGTGTAATCCGGCCGTCGTGAAGCTTGGAATTACGTTCTTGGGAGTGTGTTTGGTGGGTTATCTAGTAGGTCCACCTTTATACTGGCATGTTCTTGAAGGTTTCGCCGCCGTTCGCCGCTCCTCCTCCGCCGTCTCCTGCCCTACCTGCAACTGCGACTGCGATTCTCAGCCCCTTCTCTCCATTCCTCAAGGGTTAAGCAACGGTTCCTTTACAGATTGCGCAAAGCATGATCCCGACGTGAATGGTGACACAGAAAAGAACTTTGCTGAGCTTCTATCAGAGGAACTTAAGCTACGTGAAGCTGAAGCTTTAGAAAGCCAACAACGTGCTGACATGGCACTTCTTGAGGCCAAAAAGCTTACGTCTCAGTATCAGAAAGAAGCAGACAAATGCAATTCAGGTATGGAAACTTGTGAAGAAGCCCGTGAAAAAGCCGAAGCAGCTTTTGTAGCCCAAAAACAACAAAGCGAAATGTGGGAAATGCGGGCCCGACAAAAAGGGTGGAAGGAAGGCCGGAGTAAGTCGGTAAACACCGCATGA 564 49.29 MALNRAGSCNPAVVKLGITFLGVCLVGYLVGPPLYWHVLEGFAAVRRSSSAVSCPTCNCDCDSQPLLSIPQGLSNGSFTDCAKHDPDVNGDTEKNFAELLSEELKLREAEALESQQRADMALLEAKKLTSQYQKEADKCNSGMETCEEAREKAEAAFVAQKQQSEMWEMRARQKGWKEGRSKSVNTA 187
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00309 187 Coils Coil 106 126 - -
Pdy4g00309 187 Pfam Protein of unknown function (DUF1068) 12 179 IPR010471 -
Pdy4g00309 187 MobiDBLite consensus disorder prediction 168 187 - -
Pdy4g00309 187 Coils Coil 143 163 - -
Pdy4g00309 187 PANTHER EXPRESSED PROTEIN 1 184 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00309 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
132624 Pdy4g00309 Pdy9g01746
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:6328869 Pdy7g02541 Pdy-Chr7:71741607 dispersed
Pdy Pdy-Chr2:5210640 Pdy4g00309 Pdy-Chr4:6328869 transposed
Pdy Pdy-Chr4:6328869 Pdy9g01746 Pdy-Chr9:40457882 wgd