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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00314 ATGGACGAGGTGATCACCATGGCAGATGCAGCTTACCGCGTTAGCAAGGCGACGGTGACGGCGACGGCGACGGCGGCGACACCTTCGTCTTCAGCTCATGGCCTACCGTACAGTGTTCCATTGCTATCAGCATTTCTCGCTTTTGCGATTGCTCAATTCCTCAAGGTTATCACCACCTGGTATAAGGAAAAGAGATGGGATCCTAAAAAAATTGTTGGCTCAGGTGGAATGCCATCGTCTCATTCATCAACTGTTCTGGCACTGGCAGTATCCATTGGTCTGCATGAAGGGGTTGAATCATCATCATTTGCAATTGCAGTTGTCTTGGCTTTTATTGTTATGTATGATGCATCTGGAGTCAGACTCCATGCTGGTCGCCAAGCTGAAGTGTTGAACCAGATTGTCTGTGAATTCCCCCCAGAGCACCCTTTATCCACATCCAGACCTCTTCGGGATTCTCTTGGGCATACTCCATTACAGGTGGTTGCAGGGGCGGTGTTAGGATGTATAGTGGCATTAGTTATGAAAGCATCCAGCTAG 540 48.89 MDEVITMADAAYRVSKATVTATATAATPSSSAHGLPYSVPLLSAFLAFAIAQFLKVITTWYKEKRWDPKKIVGSGGMPSSHSSTVLALAVSIGLHEGVESSSFAIAVVLAFIVMYDASGVRLHAGRQAEVLNQIVCEFPPEHPLSTSRPLRDSLGHTPLQVVAGAVLGCIVALVMKASS 179
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00314 179 PANTHER ACID PHOSPHATASE-VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 15 177 IPR003832 -
Pdy4g00314 179 CDD PAP2-like 41 174 - -
Pdy4g00314 179 Pfam Divergent PAP2 family 40 171 IPR003832 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00314 K09775 uncharacterized protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr2:8043266 Pdy4g00314 Pdy-Chr4:6356829 dispersed
Pdy Pdy-Chr3:7524661 Pdy4g00314 Pdy-Chr4:6356829 dispersed
Pdy Pdy-Chr4:6356829 Pdy9g03282 Pdy-Chr9:59556551 dispersed
Pdy Pdy-Chr4:6356829 Pdy3g04143 Pdy-Chr3:103944916 transposed