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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00325 ATGACGAAGACTTCAAAGCCTAGAAGGAAATCTGCATGTTCCTACACCATTAAGACCACTAAAGAAATCATCAGACCCGGTGATAACGTGCTGCTAAAAGCTGCTGAGGTAAAAAGGCCGCCCTACGTTGCTCGAGTGGATAGACTGGAGTATGATGTTGATGATAAAAACAACACGACGATGGTTCGGGTGCAGTGGTACTACCGGCCAGAGGATTCGATGCAAGGCAGAAGGCCTTATAACGGTGTTCAAGAGCTGTTTCTATCGGATCATTTTGATTGGGAGAGTGTATTTACTATTGAAGGGAAGTGCAATGTTTATTCTTTTGATGAGTATAAGGAACTCGAGAATTATGGGCCTGATGACTATTTTTGTCGCTTTCAATATGAGGCTCGTACCGGAAATTTAACACCTGAACTCATTCGTGTGTACTGCATATGTGAATTGCCCGAAAATCCAGACAATTTCATGGTGCAGTGTGACGGATGTGACGACTGGTACCATCCAGCGTGTATTGGCATGACAATTGAACATGTACAACAATTAGATCAGTTTTTTTGCGCCGACTGTTCTGATGTTTGA 582 43.13 MTKTSKPRRKSACSYTIKTTKEIIRPGDNVLLKAAEVKRPPYVARVDRLEYDVDDKNNTTMVRVQWYYRPEDSMQGRRPYNGVQELFLSDHFDWESVFTIEGKCNVYSFDEYKELENYGPDDYFCRFQYEARTGNLTPELIRVYCICELPENPDNFMVQCDGCDDWYHPACIGMTIEHVQQLDQFFCADCSDV 193
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00325 193 ProSitePatterns Zinc finger PHD-type signature. 145 190 IPR019786 -
Pdy4g00325 193 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 137 193 IPR013083 -
Pdy4g00325 193 Pfam BAH domain 23 136 IPR001025 GO:0003682(InterPro)
Pdy4g00325 193 ProSiteProfiles BAH domain profile. 22 140 IPR001025 GO:0003682(InterPro)
Pdy4g00325 193 SMART PHD-3 144 191 IPR001965 -
Pdy4g00325 193 SUPERFAMILY FYVE-PHD zinc finger 135 191 IPR011011 -
Pdy4g00325 193 ProSiteProfiles Zinc finger PHD-type profile. 142 193 IPR019787 -
Pdy4g00325 193 Pfam PHD-finger 145 190 IPR019787 -
Pdy4g00325 193 SMART BAH-4 22 140 IPR001025 GO:0003682(InterPro)
Pdy4g00325 193 Gene3D - 1 136 IPR043151 -
Pdy4g00325 193 PANTHER OS08G0421900 PROTEIN 3 191 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00325 K25868 chromatin remodeling protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
132628 Pdy4g00325 Pdy9g01751
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:5280703 Pdy4g00325 Pdy-Chr4:6482356 dispersed
Pdy Pdy-Chr4:6482356 Pdy9g01751 Pdy-Chr9:40551529 dispersed
Pdy Pdy-Chr4:6465287 Pdy4g00325 Pdy-Chr4:6482356 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pdy1g00030 . 1 790 Core DNA Replication Machinery family AT1G08130 65.244 0.0 1064.0
Pdy1g00529 . 454 565 Core DNA Replication Machinery family AT5G08020 25.397 5.68e-06 46.6
Pdy1g00834 . 393 592 Core DNA Replication Machinery family AT5G22010 26.84 3.66e-14 75.5
Pdy1g01254 . 567 722 Core DNA Replication Machinery family AT4G19130 26.582 1.93e-06 45.1
Pdy1g01255 . 153 393 Core DNA Replication Machinery family AT5G08020 22.892 6.48e-07 48.1
Pdy1g01670 . 1 275 Core DNA Replication Machinery family AT2G24490 43.617 1.81e-75 229.0
Pdy1g02203 . 245 337 Core DNA Replication Machinery family AT4G14700 30.108 5.73e-10 56.6
Pdy1g02216 . 153 265 Core DNA Replication Machinery family AT5G08020 30.088 5.14e-09 52.0
Pdy1g03206 . 1 438 Core DNA Replication Machinery family AT2G42120 74.658 0.0 696.0
Pdy1g03971 . 1 318 Core DNA Replication Machinery family AT5G26680 25.904 7.41e-19 87.4
Pdy1g04246 . 17 79 Core DNA Replication Machinery family AT3G12530 61.905 6.25e-24 89.7
Pdy1g04804 . 170 578 Core DNA Replication Machinery family AT5G08020 23.786 7.09e-32 126.0
Pdy1g04978 . 1015 1267 Core DNA Replication Machinery family AT1G08840 30.827 4.23e-18 89.7
Pdy1g04979 . 1015 1267 Core DNA Replication Machinery family AT1G08840 31.579 3.63e-18 90.5
Pdy1g05348 . 1 444 Core DNA Replication Machinery family AT1G67320 68.514 0.0 651.0
Pdy1g05389 . 1 282 Core DNA Replication Machinery family AT1G26840 64.211 1.22e-128 365.0
Pdy2g00193 . 162 395 Core DNA Replication Machinery family AT5G08020 26.16 1.55e-14 70.5
Pdy2g00625 . 827 1288 Core DNA Replication Machinery family AT1G08840 30.502 5.69e-48 180.0
Pdy2g00707 . 153 277 Core DNA Replication Machinery family AT5G08020 26.772 1.00e-07 47.4
Pdy2g00747 . 3 138 Core DNA Replication Machinery family AT5G22010 44.218 1.80e-16 82.8
Pdy2g01235 . 1 1294 Core DNA Replication Machinery family AT1G08840 54.853 0.0 1422.0
Pdy2g01370 . 9 287 Core DNA Replication Machinery family AT1G21690 22.148 3.70e-13 70.1
Pdy2g01517 . 153 341 Core DNA Replication Machinery family AT5G08020 25.389 3.82e-09 53.9
Pdy2g02938 . 1 451 Core DNA Replication Machinery family AT5G41880 63.457 0.0 611.0
Pdy2g03600 . 44 764 Core DNA Replication Machinery family AT3G09660 67.962 0.0 1022.0
Pdy2g03815 . 1 2156 Core DNA Replication Machinery family AT1G08260 69.565 0.0 3152.0
Pdy2g04226 . 1 209 Core DNA Replication Machinery family AT3G12530 57.895 5.31e-86 251.0
Pdy3g00153 ACH 1014 1294 Core DNA Replication Machinery family AT1G08840 29.831 2.13e-18 89.7
Pdy3g00914 . 7 417 Core DNA Replication Machinery family AT2G01120 65.207 0.0 558.0
Pdy3g02153 . 1 831 Core DNA Replication Machinery family AT5G44635 73.923 0.0 1283.0
Pdy3g02255 . 1 267 Core DNA Replication Machinery family AT5G26680 24.632 3.49e-14 73.2
Pdy3g02304 ACH 1015 1269 Core DNA Replication Machinery family AT1G08840 31.868 5.18e-20 94.4
Pdy3g02306 ACH 1018 1269 Core DNA Replication Machinery family AT1G08840 32.463 1.07e-22 103.0
Pdy3g02309 ACH 1018 1269 Core DNA Replication Machinery family AT1G08840 32.463 1.47e-22 102.0
Pdy3g03421 . 4 534 Core DNA Replication Machinery family AT4G29910 59.888 0.0 617.0
Pdy3g03422 . 4 534 Core DNA Replication Machinery family AT4G29910 59.701 0.0 615.0
Pdy3g03512 ACH 153 602 Core DNA Replication Machinery family AT5G08020 24.896 1.84e-17 83.6
Pdy3g03971 . 1 369 Core DNA Replication Machinery family AT1G77470 76.882 0.0 575.0
Pdy3g04061 . 20 928 Core DNA Replication Machinery family AT1G44900 75.597 0.0 1380.0
Pdy3g04145 . 4 620 Core DNA Replication Machinery family AT1G67630 56.564 0.0 696.0
Pdy3g04260 ACH 1 749 Core DNA Replication Machinery family AT4G19130 51.656 0.0 751.0
Pdy3g04843 . 12 332 Core DNA Replication Machinery family AT1G63160 91.589 0.0 617.0
Pdy4g00257 ACH 245 326 Core DNA Replication Machinery family AT4G14700 32.927 1.33e-09 52.8
Pdy4g00259 . 238 333 Core DNA Replication Machinery family AT4G12620 29.167 4.23e-08 49.7
Pdy4g00325 ACH 248 334 Core DNA Replication Machinery family AT4G12620 32.584 7.70e-11 58.5
Pdy4g01244 . 934 1269 Core DNA Replication Machinery family AT1G08840 27.344 3.93e-23 103.0
Pdy4g01873 . 308 1083 Core DNA Replication Machinery family AT5G63960 27.518 9.36e-85 301.0
Pdy4g01984 . 14 311 Core DNA Replication Machinery family AT1G21690 25.145 1.31e-11 65.9
Pdy4g02006 . 887 1269 Core DNA Replication Machinery family AT1G08840 28.162 6.77e-31 129.0
Pdy4g02010 . 887 1269 Core DNA Replication Machinery family AT1G08840 29.009 3.19e-30 127.0
Pdy4g02650 . 1 727 Core DNA Replication Machinery family AT2G07690 78.747 0.0 1179.0
Pdy4g02736 . 153 293 Core DNA Replication Machinery family AT5G08020 63.83 1.35e-61 197.0
Pdy4g02795 . 1 278 Core DNA Replication Machinery family AT3G02920 46.643 3.84e-87 259.0
Pdy4g02956 . 184 269 Core DNA Replication Machinery family AT1G77320 38.202 9.76e-11 62.8
Pdy4g02997 . 406 778 Core DNA Replication Machinery family AT1G08130 26.471 1.00e-28 122.0
Pdy4g03047 . 1 596 Core DNA Replication Machinery family AT3G25100 68.5 0.0 836.0
Pdy4g03147 . 170 578 Core DNA Replication Machinery family AT5G08020 23.786 7.09e-32 126.0
Pdy4g03376 . 1 82 Core DNA Replication Machinery family AT4G18590 60.976 3.88e-33 108.0
Pdy4g03378 . 1 106 Core DNA Replication Machinery family AT4G18590 59.434 3.26e-47 145.0
Pdy4g03652 . 1096 1322 Core DNA Replication Machinery family AT4G02110 70.614 2.89e-110 377.0
Pdy4g03659 . 1 716 Core DNA Replication Machinery family AT4G02060 82.821 0.0 1253.0
Pdy4g03752 . 2 349 Core DNA Replication Machinery family AT5G27740 35.912 6.03e-61 205.0
Pdy4g03922 . 4 534 Core DNA Replication Machinery family AT4G29910 59.815 0.0 623.0
Pdy4g04118 . 1 774 Core DNA Replication Machinery family AT5G46280 68.886 0.0 1070.0
Pdy4g04307 . 1 312 Core DNA Replication Machinery family AT5G26680 85.256 0.0 565.0
Pdy4g04309 . 1 359 Core DNA Replication Machinery family AT5G26680 84.401 0.0 649.0
Pdy4g04308 . 1 185 Core DNA Replication Machinery family AT5G26680 81.622 3.27e-107 313.0
Pdy4g04356 . 153 532 Core DNA Replication Machinery family AT5G08020 25.326 3.37e-26 110.0
Pdy5g00393 . 454 565 Core DNA Replication Machinery family AT5G08020 30.952 1.32e-11 63.9
Pdy5g00726 . 12 363 Core DNA Replication Machinery family AT2G37560 65.439 3.24e-177 494.0
Pdy5g02282 . 56 164 Core DNA Replication Machinery family AT2G24490 28.125 7.50e-09 51.6
Pdy5g02351 . 12 560 Core DNA Replication Machinery family AT2G31270 40.21 3.30e-99 310.0
Pdy5g03099 . 35 504 Core DNA Replication Machinery family AT1G07270 59.583 0.0 567.0
Pdy5g03169 ACH 1014 1294 Core DNA Replication Machinery family AT1G08840 28.814 1.37e-18 90.5
Pdy5g03268 . 1 972 Core DNA Replication Machinery family AT1G77320 48.844 0.0 882.0
Pdy6g00099 . 1 801 Core DNA Replication Machinery family AT1G79150 55.623 0.0 872.0
Pdy6g00175 . 14 733 Core DNA Replication Machinery family AT5G16690 48.295 0.0 664.0
Pdy6g00176 . 3 124 Core DNA Replication Machinery family AT1G09815 51.613 1.17e-44 140.0
Pdy6g00408 . 234 526 Core DNA Replication Machinery family AT5G22110 74.061 1.15e-163 463.0
Pdy6g00409 . 18 208 Core DNA Replication Machinery family AT5G22110 56.25 2.69e-67 213.0
Pdy6g00441 . 886 1294 Core DNA Replication Machinery family AT1G08840 27.932 2.67e-38 153.0
Pdy6g01226 . 153 544 Core DNA Replication Machinery family AT5G08020 25.0 8.86e-24 103.0
Pdy6g02606 . 153 776 Core DNA Replication Machinery family AT1G08130 38.725 7.31e-166 515.0
Pdy6g02706 . 2 349 Core DNA Replication Machinery family AT5G27740 36.364 1.77e-75 246.0
Pdy6g02777 . 153 603 Core DNA Replication Machinery family AT5G08020 23.395 6.19e-15 75.5
Pdy6g02782 . 1 339 Core DNA Replication Machinery family AT1G21690 81.121 0.0 576.0
Pdy6g03162 . 3 287 Core DNA Replication Machinery family AT1G21690 25.658 3.51e-18 85.1
Pdy6g03864 . 1014 1267 Core DNA Replication Machinery family AT1G08840 32.117 2.92e-21 100.0
Pdy7g00259 . 30 1095 Core DNA Replication Machinery family AT5G63960 82.249 0.0 1854.0
Pdy7g00363 . 888 1283 Core DNA Replication Machinery family AT1G08840 30.493 2.38e-38 154.0
Pdy7g00771 . 535 597 Core DNA Replication Machinery family AT5G08020 46.032 1.48e-15 67.0
Pdy7g00824 . 17 396 Core DNA Replication Machinery family AT2G20980 51.399 5.70e-125 364.0
Pdy7g00947 . 513 644 Core DNA Replication Machinery family AT4G19130 25.0 7.08e-06 45.8
Pdy7g00948 . 153 299 Core DNA Replication Machinery family AT5G08020 27.815 3.63e-09 53.1
Pdy7g01533 . 434 486 Core DNA Replication Machinery family AT3G09660 75.472 7.55e-22 85.1
Pdy7g01655 ACH 245 341 Core DNA Replication Machinery family AT4G14700 27.273 2.48e-08 52.0
Pdy7g01662 . 2 847 Core DNA Replication Machinery family AT2G16440 73.944 0.0 1241.0
Pdy7g02124 . 1 201 Core DNA Replication Machinery family AT1G80190 60.396 1.13e-89 259.0
Pdy7g02707 . 1 640 Core DNA Replication Machinery family AT2G06510 67.344 0.0 913.0
Pdy8g00203 . 1 220 Core DNA Replication Machinery family AT5G49010 56.0 1.98e-87 256.0
Pdy8g00299 . 153 532 Core DNA Replication Machinery family AT5G08020 25.587 3.40e-26 110.0
Pdy8g00785 . 934 1269 Core DNA Replication Machinery family AT1G08840 27.273 1.11e-23 105.0
Pdy8g01077 . 1 182 Core DNA Replication Machinery family AT3G55490 60.989 9.09e-82 238.0
Pdy8g01782 ACH 1014 1267 Core DNA Replication Machinery family AT1G08840 29.412 2.55e-21 99.0
Pdy8g01784 ACH 1014 1267 Core DNA Replication Machinery family AT1G08840 29.044 5.84e-21 97.8
Pdy8g01786 ACH 1014 1267 Core DNA Replication Machinery family AT1G08840 30.855 2.61e-21 99.0
Pdy8g02129 . 11 1522 Core DNA Replication Machinery family AT5G67100 58.677 0.0 1741.0
Pdy8g02184 . 111 192 Core DNA Replication Machinery family AT4G02110 40.244 1.72e-13 71.2
Pdy8g02298 . 1127 1245 Core DNA Replication Machinery family AT4G02110 31.746 8.17e-07 50.8
Pdy8g02307 . 141 321 Core DNA Replication Machinery family AT5G26680 30.939 1.62e-13 72.8
Pdy8g02546 . 9 809 Core DNA Replication Machinery family AT4G14700 62.411 0.0 994.0
Pdy8g02611 . 1 354 Core DNA Replication Machinery family AT5G27740 87.853 0.0 661.0
Pdy8g02813 . 1 296 Core DNA Replication Machinery family AT2G25100 76.589 6.76e-174 481.0
Pdy8g03031 . 1 209 Core DNA Replication Machinery family AT3G12530 58.852 4.22e-90 261.0
Pdy9g00494 . 153 565 Core DNA Replication Machinery family AT5G08020 24.146 8.27e-17 82.0
Pdy9g00747 . 166 214 Core DNA Replication Machinery family AT4G14700 42.857 2.67e-07 51.2
Pdy9g01485 ACH 12 640 Core DNA Replication Machinery family AT2G14050 72.926 0.0 951.0
Pdy9g01751 ACH 245 341 Core DNA Replication Machinery family AT4G14700 32.323 8.33e-10 56.2
Pdy9g02385 . 26 189 Core DNA Replication Machinery family AT5G45400 31.548 2.95e-20 87.0
Pdy9g02386 . 1 130 Core DNA Replication Machinery family AT5G45400 35.075 2.65e-19 83.6
Pdy9g02387 . 1 148 Core DNA Replication Machinery family AT5G45400 36.667 2.87e-21 90.5
Pdy9g02388 . 1 148 Core DNA Replication Machinery family AT5G45400 35.333 4.01e-22 93.2
Pdy9g02389 ACH 1 760 Core DNA Replication Machinery family AT4G19130 48.451 0.0 736.0
Pdy9g02773 . 888 1283 Core DNA Replication Machinery family AT1G08840 30.493 1.40e-37 152.0
Pdy9g03218 . 19 260 Core DNA Replication Machinery family AT5G26680 28.689 8.85e-19 87.4
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Pdy BAH 8.7e-21 No_clan TR PHD