AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00326 ATGGAAGAATCACAATCACCGGCGATGAACGAGCCTCACCAGGATTTGATTGCAGCATTCTCCGAGATAACTTCTGCCTCCAAGGAAGAAGCCACCTTCTTCCTCGAATCCCACAATAACGATCTCGATTCCGCCGTCTCCACCTTTTTCGAAACCACCTCCGTCGCCGCCGAAGTCGGCGAAGACGCTCTCGTTTCTGATGTACCTCGTCGGCTCCCTAACCCTAGCCGTGCTTCTGATATCCATTCCCCTCCGTCCTCTTCCCCGTCTCGTTCCCGATCAGCTTCCCCGCCCCCTTCACTTGGGTTACAACAATTCGCCGGTGGAAATCCGTACAATTTACGATCTCGGAATACTGCTAATGATAAGAAGCCGTCCGGTAGTCGGTCCACTGGTCGCATACGGACTTTTGCAGATCTGAATCGACCCGGTGATGAATCGGGGAGCGACTCAGATGAACCTCAAGAGTACTATACTGGTGGTGAGAAGAGCGGAATGCTTGTTCAGGATCCATCAAAGATGAATGATGTGGAATCACTGTTTAAGCAAGCAAGACAAGCAGGAGCGGAAGAAGGAACTCTTGATCAATTCCAACCATCTTCAACCTCAAGAAGTAGCTTTACTGGAAGGGGAAGGCTTCTATCTGGAGAGACAACATCATCATCAGCTTCTAATCAGCAGTCTGAACCTGAGGTTCACACACACACAATCACTTTCTGGACCAATGGTTTCACTGTAGATGATGGCCCTTTGAGGAGGCTAGATGATCCCCAAAATGCATCTTTCTTGGAGAGTATAAGGAAGTCTGAGTGCCCAGAGGAACTTAGGCCCGCAAAAGGAAGAGCTCCTGTGCATGTTAGTCTTGTGAGGAAGTTAGAGGACTACCCTGTCCAGAAACACCGCACTCCTGCCTTTGTGGGGGTGGGCAGAACCCTAGGCACCACCACTTCTTCAGAGGACACTTCTGCCGCTATTCCAACCCCTGCCGCCGCCGCCCCAACCCCATCTCTGGGCTTAGTTGTGGATGACACTTTACCCTCCACCTCTATTCAACTGTGGTTGGCTGACGGGACCCGCATGGTTTCACGCTTCAATTTTCACCACACTATAAGCGACATCCGTTCTTTCATTGACGCATCAAGGCCCGGTGGGCCAATGGCTTATCAGCTACTGACAATGGGATTCCCTCCAAAACAGCTGAATGATTTGAACCAGACAATTGAAGAAGCTGGGTTGGCGAATTCGGTTGTGATGCAGAAACTCTAA 1266 50.55 MEESQSPAMNEPHQDLIAAFSEITSASKEEATFFLESHNNDLDSAVSTFFETTSVAAEVGEDALVSDVPRRLPNPSRASDIHSPPSSSPSRSRSASPPPSLGLQQFAGGNPYNLRSRNTANDKKPSGSRSTGRIRTFADLNRPGDESGSDSDEPQEYYTGGEKSGMLVQDPSKMNDVESLFKQARQAGAEEGTLDQFQPSSTSRSSFTGRGRLLSGETTSSSASNQQSEPEVHTHTITFWTNGFTVDDGPLRRLDDPQNASFLESIRKSECPEELRPAKGRAPVHVSLVRKLEDYPVQKHRTPAFVGVGRTLGTTTSSEDTSAAIPTPAAAAPTPSLGLVVDDTLPSTSIQLWLADGTRMVSRFNFHHTISDIRSFIDASRPGGPMAYQLLTMGFPPKQLNDLNQTIEEAGLANSVVMQKL 421
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00326 421 MobiDBLite consensus disorder prediction 193 232 - -
Pdy4g00326 421 Pfam UBA-like domain 14 52 - -
Pdy4g00326 421 ProSiteProfiles UBX domain profile. 343 420 IPR001012 GO:0005515(InterPro)
Pdy4g00326 421 Pfam UBX domain 346 420 IPR001012 GO:0005515(InterPro)
Pdy4g00326 421 Gene3D - 297 421 - -
Pdy4g00326 421 MobiDBLite consensus disorder prediction 79 135 - -
Pdy4g00326 421 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 225 317 IPR036241 -
Pdy4g00326 421 SUPERFAMILY Ubiquitin-like 305 419 IPR029071 -
Pdy4g00326 421 Gene3D SEP domain 232 294 IPR036241 -
Pdy4g00326 421 FunFam Plant UBX domain-containing protein 4 232 294 - -
Pdy4g00326 421 Gene3D - 9 52 - -
Pdy4g00326 421 Pfam SEP domain 237 310 IPR012989 -
Pdy4g00326 421 CDD UBX-UBXN2 349 420 - -
Pdy4g00326 421 MobiDBLite consensus disorder prediction 186 232 - -
Pdy4g00326 421 FunFam Plant UBX domain-containing protein 4 297 421 - -
Pdy4g00326 421 SMART ubx-3 342 420 IPR001012 GO:0005515(InterPro)
Pdy4g00326 421 SMART faf-3 229 322 IPR012989 -
Pdy4g00326 421 PANTHER UBX DOMAIN CONTAINING PROTEIN 11 420 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Pdy4g00326 421 MobiDBLite consensus disorder prediction 58 169 - -
Pdy4g00326 421 ProSiteProfiles SEP domain profile. 232 296 IPR012989 -
Pdy4g00326 421 SUPERFAMILY UBA-like 9 51 IPR009060 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00326 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:6489767 Pdy4g04549 Pdy-Chr4:98126948 wgd