AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00347 ATGCGGTTATCCATGACAATCACAAACCCTAGCTTCCCATCTGTTCCCCCATTTCACCAATCCACCCCTCACCCTCCTTCATACAAACAACCCCCAATGATAACACTTCAGAAACCATCAAAAACCCATGATACTTCTACAAATTCCCTAAAGAATTCTGGGTTTTTATCAGCAATTGGGAACGCAATCGAAGAACAGGAGTATAGGAAAGCCAGGGCTGAAGTTATTCGAAAAGGGACAGGGTTAGAGGGTTATAATATCGAGGGTCTTTCAATTGGTGGTCACGAAACTTGTGTTATTATCCCTGAATTCAAGTGTGCGTTTGATATCGGAAGGTGTCCTCCCAGAGCTGTTGCCATGAACTATTTGTTCATTACTCATGCTCACCTTGATCACATTGGCGGGCTACCCATGTATATCGCAACTCGTGGTTTGTATAGCATGAGTCCCCCAACTGTATTTGTACCTCCTTCCATTAAAGAGGATGTTGAAAACTTAATCGAGCTTCACAGGAAGATGGGTCAGGTGGAGCTAAATCTTGATTTGGTTGCATTGGATGTAGGAGAGACATATGAGCTAAGAAACGATCTTGTTGTACGGCCTTTTAAAACTCATCATGTCATACCCAGTCAGGGTTATGTCATTTACTCGGTTCGCAAGAAGCTAAAAAAGCAATACGCTCATTTGAAAGGAAGAGAAATCGAGAAAAAGAAGAAATCTGGTGTTGAGATTACAGATATCATATTGTCCCCAGAGGTGGCATTCACTGGTGATACAAGTTCTGATTTTATACTTGATCCCAGAAGTTCTGATGCCTTAAGAGCCAAAGTTCTTATTACTGAGGCTACTTTCTTGGATGACAAATGTAATATTGAGCATGCGCGAGAACATGGTCACATGCATATTGATGAGATTATCGAGCATGCTAAGTGGATTAGAAACGACTCGATTCTATTGACTCATTTCTCTTCACGCTACCATATCGAGGAAATCCGTGAAGCTGTGACAAAGTTGCAGTCAAAGGTTTCAGCGAAAGTGGTTCCACTCACAGAAGGTTTTAGATCAATGTACTCATCATAA 1080 41.57 MRLSMTITNPSFPSVPPFHQSTPHPPSYKQPPMITLQKPSKTHDTSTNSLKNSGFLSAIGNAIEEQEYRKARAEVIRKGTGLEGYNIEGLSIGGHETCVIIPEFKCAFDIGRCPPRAVAMNYLFITHAHLDHIGGLPMYIATRGLYSMSPPTVFVPPSIKEDVENLIELHRKMGQVELNLDLVALDVGETYELRNDLVVRPFKTHHVIPSQGYVIYSVRKKLKKQYAHLKGREIEKKKKSGVEITDIILSPEVAFTGDTSSDFILDPRSSDALRAKVLITEATFLDDKCNIEHAREHGHMHIDEIIEHAKWIRNDSILLTHFSSRYHIEEIREAVTKLQSKVSAKVVPLTEGFRSMYSS 359
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00347 359 CDD RNaseZ-MBL-fold 84 282 - -
Pdy4g00347 359 PANTHER TRNASE Z TRZ1 41 353 - -
Pdy4g00347 359 MobiDBLite consensus disorder prediction 1 15 - -
Pdy4g00347 359 SUPERFAMILY Metallo-hydrolase-oxidoreductase 119 339 IPR036866 -
Pdy4g00347 359 Gene3D - 85 354 IPR036866 -
Pdy4g00347 359 MobiDBLite consensus disorder prediction 16 30 - -
Pdy4g00347 359 MobiDBLite consensus disorder prediction 1 30 - -
Pdy4g00347 359 Pfam Beta-lactamase superfamily domain 119 322 IPR001279 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00347 K00784 ribonuclease Z [EC:3.1.26.11]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:6817901 Pdy6g00277 Pdy-Chr6:4355437 dispersed