AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pdy4g00376 | ATGAGTAAAATCTTGAGTTTAATTTTCTGCATTTTGATATCGAATCTGACAGCATCTTATGCTCAAAATTGCAACGCGTATGTTTTTTCAAGTAACGCAATCTACGAATCATGCGTCACTTTAAATCGTTTAAACTCTCACCTTCACTGGAACTACCACCCCAACGGTACCGTCGACGTGGCTTTCCGGCACACCGGGTCAACCACGTCTCAATGGGTGGCTTGGTCTCTCAACCTTGCCAGGTCGGGTATGGTTGGAGCTCAGTGTCTTGTTGCTGTAACCGGCTCAAACGGGGCCGTACGGGCTTACACTTCATCTGTTAACAGCTACCAAACCAGTCTGCAGCCTAGCGCACTGAGCTTTGAAGTGCCCAGGATCAGGGCGGAGAGGCTTGCCGGCGGGGATCTGATGATTTACGCGACGTTGGTGTTGCCTAGTGGTCGGACGTCGTTTAATCAAGTATGGCAGGTGGGCCCTGTTAATAATAATGTTCCGGCTACTCATGCGATGGGTAGCGATAACCGGAATTCCGTCGGAACGGTGGATTTCACCACCGGTCAGACTAGTGCCAGCGGTGGTAATGTTGGTGGGTCGCGGCAGCGCCGGAGAAACACTCATGGAGTATTGAACGCGGTTAGTTGGGGAGTACTGATGCCCATGGGAGCTATGGCTGCAAGATATTTAAAGGTGTTTAATGTAGCTAATCCAGCCTGGTTTTACATCCACGTTACTTGCCAAACATCAGCCTATATCGTCGGTGTAGCCGGATGGGCCACCGGACTGAAGCTCGGCAGCGACTCCACCGGAATCGATTACGACACTCACCGGAACATCGGGATCACCTTGTTTGCACTTGGAACACTTCAGGTTTTTGCCCTTCTCTTGAGACCCAAGCCAGATAACAAATACAGATTCTACTGGAACATCTATCACCATAGTCTTGGATACTCTGTGATCATTTTGAGCATCATCAATGTCTATGAGGGACTTGATATCTTGGACCCTGAGGAGAAGTGGAAGAGGGCTTACACTGGCATACTTATTGCTTTGGGGGTTACTACAGTTGTATTGGAGGCCTTTACATGGTTCATTGTTATGAAGAGGAAGAAGGAAGACAAAAGAACACATGCAGGAACAAATGGTTCTTATGGAGCCAATGGATATGGCCAGTCTGCATAG | 1179 | 48.6 | MSKILSLIFCILISNLTASYAQNCNAYVFSSNAIYESCVTLNRLNSHLHWNYHPNGTVDVAFRHTGSTTSQWVAWSLNLARSGMVGAQCLVAVTGSNGAVRAYTSSVNSYQTSLQPSALSFEVPRIRAERLAGGDLMIYATLVLPSGRTSFNQVWQVGPVNNNVPATHAMGSDNRNSVGTVDFTTGQTSASGGNVGGSRQRRRNTHGVLNAVSWGVLMPMGAMAARYLKVFNVANPAWFYIHVTCQTSAYIVGVAGWATGLKLGSDSTGIDYDTHRNIGITLFALGTLQVFALLLRPKPDNKYRFYWNIYHHSLGYSVIILSIINVYEGLDILDPEEKWKRAYTGILIALGVTTVVLEAFTWFIVMKRKKEDKRTHAGTNGSYGANGYGQSA | 392 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pdy4g00376 | 392 | CDD | DOMON-CIL1-like | 35 | 185 | IPR045265 | - | |
| Pdy4g00376 | 392 | Pfam | Protein of unknown function (DUF568) | 84 | 183 | IPR045265 | - | |
| Pdy4g00376 | 392 | Gene3D | - | 183 | 376 | - | - | |
| Pdy4g00376 | 392 | PIRSF | UCP037471 | 1 | 390 | IPR017214 | - | |
| Pdy4g00376 | 392 | Pfam | Eukaryotic cytochrome b561 | 206 | 330 | IPR006593 | - | |
| Pdy4g00376 | 392 | SMART | 561-7 | 205 | 330 | IPR006593 | - | |
| Pdy4g00376 | 392 | FunFam | Cytochrome b561 and DOMON domain-containing protein | 183 | 374 | - | - | |
| Pdy4g00376 | 392 | PANTHER | CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN | 6 | 370 | - | - | |
| Pdy4g00376 | 392 | ProSiteProfiles | DOMON domain profile. | 44 | 158 | IPR005018 | - | |
| Pdy4g00376 | 392 | ProSiteProfiles | Cytochrome b561 domain profile. | 164 | 366 | IPR006593 | - | |
| Pdy4g00376 | 392 | CDD | Cyt-b561-FRRS1-like | 176 | 359 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pdy4g00376 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 132637 | Pdy4g00376 | Pdy7g02592 | |
| 132638 | Pdy4g00376 | Pdy9g01779 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pdy | Pdy-Chr4:7306838 | Pdy4g03077 | Pdy-Chr4:79368823 | dispersed | |
| Pdy | Pdy-Chr1:8000730 | Pdy4g00376 | Pdy-Chr4:7306838 | transposed | |
| Pdy | Pdy-Chr1:66839114 | Pdy4g00376 | Pdy-Chr4:7306838 | transposed | |
| Pdy | Pdy-Chr3:15657287 | Pdy4g00376 | Pdy-Chr4:7306838 | transposed | |
| Pdy | Pdy-Chr4:7306838 | Pdy7g02592 | Pdy-Chr7:72370484 | wgd | |
| Pdy | Pdy-Chr4:7306838 | Pdy9g01779 | Pdy-Chr9:40882369 | wgd |