AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00377 ATGGCTATAATTGTAAGGTATGCCTTCATCCTGCTTCATTTTCTTGCATCTGGTTTTGGAATATCAAACAGCCGAACATGTTCAGACCACAGATTCACATCTGAAAGAGTCTACACTTCTTGTAAGGATCTTACTCATCTATCGGCTCATCTCCACTGGACCTACAACTCATCCATGGGCATAGCCAAGATTGCATACAGGGCCAGACAAGGGCCCCATGGTTGGGTTGCATGGGCCATCAACCCAAACCAGATAGGTATGGTTGGGTCAGAAGCACTGGTTGCTTTCCGAAACAGAAATGGGAGTATGACAGTATATACAACGATGATAACAAGTTACAGCCCGTCAATGTTGCCTGGAGATCTTAGCTTCAAGGTTTCGGGTCTATCTGCTGAGTTTTTAAATAATGAGATTATCATTTATGCTGCTGTAGGCCCGTTTGCAGGCGGATCACTTGTTAATCAAGTATGGCAAGCTGGGAATCTGGTTTTGGATGATATACCTCAAATGCATGAGGTTTCTCAGCAAAATCTCCAATCTACAGGGGAGCTTGATTTCTTGGCTGAACAGAACTGA 576 43.92 MAIIVRYAFILLHFLASGFGISNSRTCSDHRFTSERVYTSCKDLTHLSAHLHWTYNSSMGIAKIAYRARQGPHGWVAWAINPNQIGMVGSEALVAFRNRNGSMTVYTTMITSYSPSMLPGDLSFKVSGLSAEFLNNEIIIYAAVGPFAGGSLVNQVWQAGNLVLDDIPQMHEVSQQNLQSTGELDFLAEQN 191
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00377 191 CDD DOMON-CIL1-like 38 187 IPR045265 -
Pdy4g00377 191 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 8 188 - -
Pdy4g00377 191 Pfam Protein of unknown function (DUF568) 87 186 IPR045265 -
Pdy4g00377 191 ProSiteProfiles DOMON domain profile. 47 160 IPR005018 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00377 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:7322606 Pdy5g02498 Pdy-Chr5:74671745 dispersed
Pdy Pdy-Chr4:7322606 Pdy1g02867 Pdy-Chr1:78216646 transposed