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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00380 ATGTTTCATCCAACCCCGCTCCCCCAAATTCAAAAAATGTCGCTCACACCAACTGTTCATCACAGTGATCGCGATCTTATCGCACACCCTGTTCGTCCTTCCGGTGAAATTCATGTTATTGTGGGGCCGATGTTCGCCGGTAAAACTACAGCTCTTCTTCGCAGGATCAAATCTGAATGTTCCAGTGGCAGGAATATAGCGATGATCAAATCAAGCAAGGATACCCGATACGCGATAGATTCAGTTGTGACCCATGATGGAAACAAGTATCCATGTTGGGCTCTGCCTGATCTGTCTTCATTTAAACAAAGACTTGGAGAAGAAGCTTATGAAAAGTTGGATGTTATAGGAATTGATGAAGCACAATTCTTTGATGATCTCTATGACTTTTGTTGTAAAGCTGCTGATCATGATGGGAAAACTGTTATAGTTGCTGGTCTTGATGGTGATTATTTAAGAAGGAACTTTGGTCCAGTGCTTGATATAGTACCCCTTGCTGATACCATAACCAAATTAACCGCTCGATGTGAACTATGTGGCAAACGAGCTCATTTCACCTACAGAAAGACCAGAGAGACAAAAACCGAACTTATAGGTGGGGCGGATATGTATATGCCTGTTTGTCGTCAACATTATGTTAGCGGTCATACGGTGACCAAAGCTGCTGTTTAG 672 42.71 MFHPTPLPQIQKMSLTPTVHHSDRDLIAHPVRPSGEIHVIVGPMFAGKTTALLRRIKSECSSGRNIAMIKSSKDTRYAIDSVVTHDGNKYPCWALPDLSSFKQRLGEEAYEKLDVIGIDEAQFFDDLYDFCCKAADHDGKTVIVAGLDGDYLRRNFGPVLDIVPLADTITKLTARCELCGKRAHFTYRKTRETKTELIGGADMYMPVCRQHYVSGHTVTKAAV 223
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00380 223 PANTHER THYMIDINE KINASE 29 222 IPR001267 GO:0004797(PANTHER)|GO:0004797(InterPro)|GO:0005524(InterPro)|GO:0046104(PANTHER)
Pdy4g00380 223 FunFam Thymidine kinase 173 215 - -
Pdy4g00380 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 214 - -
Pdy4g00380 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 173 IPR027417 -
Pdy4g00380 223 Gene3D - 173 214 - -
Pdy4g00380 223 PIRSF Tdk 32 222 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Pdy4g00380 223 FunFam Thymidine kinase 31 172 - -
Pdy4g00380 223 ProSitePatterns Thymidine kinase cellular-type signature. 199 212 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Pdy4g00380 223 Gene3D - 29 172 IPR027417 -
Pdy4g00380 223 Pfam Thymidine kinase 35 212 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00380 K00857 thymidine kinase [EC:2.7.1.21]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr1:66954641 Pdy4g00380 Pdy-Chr4:7347151 dispersed