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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00382 ATGCCATCTGCAAACCCTGGGTCATCTGATCAAGACAGAGAACCATTTGTTGAGGTTGATCCATCAGGAAGATTCGGGCGGTACAGTGACATGTTGGGTGCTGGTGCAGTAAAGAAGGTCTACAGAGGATTTGATCAAGAAGAAGGCAGGGATGTGGCCTGGAACCAAGTAAAACTTAGGAACTTTATTGAAGATCCATCTGTCCTCAAGAGACTGCTATCAGAAATTGAACTGCTACAGACACTCGAGAATGAAAACATCATTGTTCTTTACAGTTTTTGGAGGGATATTGAACACAGCACCCTGAATTTTATCACAGAGGCATGTGCTTCAGGTAATCTGAGGGATTATAGAAAGAAGCATAGACGGGTCTCGCTCAAGGCCTTGAAGAATTGGTCAAGACAGATACTGAGAGGCTTGGAGTATCTCCATACTCATGAACCGTGTATCATTCACAGGGATCTTAACTGCAGTAACATCTTCATCAATGGAAACATCGGAAAGGTTAAGATTGGTGACTTGGGTTTAGCAGCAGTGGTAGGAAAGAACCACGCGGCTCATACATTACTAGGAACACCAGAATACATGGCTCCCGAGCTCTATGAGGAAGATTACAACGAGTTGGTGGACATCTACTCATTTGGAATGTGTTTGGTTGAAATGGCTACAATGGAGATACCATACAGTGAGTGTGACAGCATTGCTAAAATTTACAGAAAGGTTACAAGCGGTGTGATGCCTCAAGCATTTAACAAAGTAAGTGATCCTGAATTGAAAGCCTTTATCGAACGATGCATTGGTCAGCCACGAGCGAGGCCTTCTGCATCTGATCTTCTTAATGACCCGTTCCTTATCGAGATTAGCAGTGAAGAGAGCGATGGTAGTGCTTAG 891 43.77 MPSANPGSSDQDREPFVEVDPSGRFGRYSDMLGAGAVKKVYRGFDQEEGRDVAWNQVKLRNFIEDPSVLKRLLSEIELLQTLENENIIVLYSFWRDIEHSTLNFITEACASGNLRDYRKKHRRVSLKALKNWSRQILRGLEYLHTHEPCIIHRDLNCSNIFINGNIGKVKIGDLGLAAVVGKNHAAHTLLGTPEYMAPELYEEDYNELVDIYSFGMCLVEMATMEIPYSECDSIAKIYRKVTSGVMPQAFNKVSDPELKAFIERCIGQPRARPSASDLLNDPFLIEISSEESDGSA 296
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00382 296 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Pdy4g00382 296 SUPERFAMILY Protein kinase-like (PK-like) 19 284 IPR011009 -
Pdy4g00382 296 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Pdy4g00382 296 FunFam Probable serine-threonine-protein kinase WNK1 10 107 - -
Pdy4g00382 296 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Pdy4g00382 296 FunFam probable serine-threonine-protein kinase WNK9 109 290 - -
Pdy4g00382 296 PANTHER SERINE-THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 285 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Pdy4g00382 296 Gene3D Transferase(Phosphotransferase) domain 1 109 289 - -
Pdy4g00382 296 CDD STKc-WNK 24 284 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00382 K08867 WNK lysine deficient protein kinase [EC:2.7.11.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
132640 Pdy4g00382 Pdy7g01702
132641 Pdy4g00382 Pdy9g01782
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:7352823 Pdy4g01074 Pdy-Chr4:20568055 dispersed
Pdy Pdy-Chr4:7352823 Pdy7g01113 Pdy-Chr7:48021144 wgd
Pdy Pdy-Chr4:7352823 Pdy9g01782 Pdy-Chr9:40909766 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pdy1g00119 ACH 130 295 MAP Kinase Kinase Kinase Protein gene family AT3G27560 22.599 1.15e-07 52.8
Pdy1g00398 . 9 751 MAP Kinase Kinase Kinase Protein gene family AT1G67890 42.303 3.06e-177 519.0
Pdy1g00399 . 4 756 MAP Kinase Kinase Kinase Protein gene family AT3G06620 50.854 0.0 719.0
Pdy1g00400 . 5 748 MAP Kinase Kinase Kinase Protein gene family AT1G67890 47.403 0.0 652.0
Pdy1g00605 . 1 814 MAP Kinase Kinase Kinase Protein gene family AT5G03730 57.073 0.0 790.0
Pdy1g00926 . 5 479 MAP Kinase Kinase Kinase Protein gene family AT2G43850 76.421 0.0 765.0
Pdy1g01558 . 86 175 MAP Kinase Kinase Kinase Protein gene family AT2G31010 50.549 1.50e-20 82.8
Pdy1g02082 . 151 484 MAP Kinase Kinase Kinase Protein gene family AT5G58950 54.519 1.56e-133 390.0
Pdy1g02386 . 14 525 MAP Kinase Kinase Kinase Protein gene family AT3G51630 52.759 0.0 567.0
Pdy1g02645 . 22 378 MAP Kinase Kinase Kinase Protein gene family AT3G22750 78.177 0.0 608.0
Pdy1g02945 ACH 9 564 MAP Kinase Kinase Kinase Protein gene family AT5G58350 59.792 0.0 638.0
Pdy1g02999 ACH 23 452 MAP Kinase Kinase Kinase Protein gene family AT1G07150 41.86 1.09e-104 319.0
Pdy1g03547 . 1 542 MAP Kinase Kinase Kinase Protein gene family AT4G38470 67.395 0.0 711.0
Pdy1g03903 . 1 809 MAP Kinase Kinase Kinase Protein gene family AT3G58640 68.742 0.0 1131.0
Pdy1g03944 . 21 152 MAP Kinase Kinase Kinase Protein gene family AT5G57610 45.652 1.82e-26 113.0
Pdy1g03965 . 717 1014 MAP Kinase Kinase Kinase Protein gene family AT1G73660 78.333 2.76e-171 522.0
Pdy1g04197 . 1 871 MAP Kinase Kinase Kinase Protein gene family AT1G63700 59.213 0.0 879.0
Pdy1g05271 . 121 230 MAP Kinase Kinase Kinase Protein gene family AT1G04700 47.748 2.40e-28 110.0
Pdy1g05428 . 8 437 MAP Kinase Kinase Kinase Protein gene family AT1G14000 80.698 0.0 714.0
Pdy2g00113 ACH 164 320 MAP Kinase Kinase Kinase Protein gene family AT1G79570 35.795 5.19e-25 109.0
Pdy2g00412 ACH 172 275 MAP Kinase Kinase Kinase Protein gene family AT1G79570 46.667 2.75e-27 107.0
Pdy2g00907 . 17 442 MAP Kinase Kinase Kinase Protein gene family AT3G18750 60.606 0.0 522.0
Pdy2g01018 . 48 444 MAP Kinase Kinase Kinase Protein gene family AT3G58760 44.198 8.62e-105 316.0
Pdy2g01351 . 7 434 MAP Kinase Kinase Kinase Protein gene family AT4G18950 66.667 0.0 594.0
Pdy2g01577 . 1 525 MAP Kinase Kinase Kinase Protein gene family AT5G58950 56.611 0.0 605.0
Pdy2g02351 . 99 230 MAP Kinase Kinase Kinase Protein gene family AT5G40540 23.649 8.90e-06 46.2
Pdy2g02894 . 34 560 MAP Kinase Kinase Kinase Protein gene family AT5G41990 51.371 3.13e-175 504.0
Pdy2g03275 . 2 763 MAP Kinase Kinase Kinase Protein gene family AT3G06620 59.13 0.0 891.0
Pdy2g03356 . 103 384 MAP Kinase Kinase Kinase Protein gene family AT3G01490 23.103 1.51e-19 89.7
Pdy2g03742 ACH 132 289 MAP Kinase Kinase Kinase Protein gene family AT5G50180 23.077 7.53e-08 53.1
Pdy3g00043 . 22 154 MAP Kinase Kinase Kinase Protein gene family AT5G57610 42.222 4.49e-28 116.0
Pdy3g00240 . 34 542 MAP Kinase Kinase Kinase Protein gene family AT4G38470 51.357 6.12e-175 504.0
Pdy3g00411 ACH 6 344 MAP Kinase Kinase Kinase Protein gene family AT5G55090 50.585 5.72e-112 333.0
Pdy3g00703 ACH 6 512 MAP Kinase Kinase Kinase Protein gene family AT3G48260 59.675 0.0 639.0
Pdy3g00708 . 119 222 MAP Kinase Kinase Kinase Protein gene family AT1G04700 45.192 6.68e-23 93.6
Pdy3g01127 . 83 166 MAP Kinase Kinase Kinase Protein gene family AT2G31800 40.476 3.52e-07 49.7
Pdy3g01136 . 333 592 MAP Kinase Kinase Kinase Protein gene family AT4G08500 29.703 1.61e-24 107.0
Pdy3g01809 . 132 282 MAP Kinase Kinase Kinase Protein gene family AT5G50180 26.829 7.58e-08 53.1
Pdy3g02135 . 951 1242 MAP Kinase Kinase Kinase Protein gene family AT1G79570 72.355 6.47e-142 430.0
Pdy3g02337 . 106 329 MAP Kinase Kinase Kinase Protein gene family AT3G06030 26.459 3.41e-21 97.1
Pdy3g02379 . 6 569 MAP Kinase Kinase Kinase Protein gene family AT4G35780 67.244 0.0 775.0
Pdy3g02762 . 288 607 MAP Kinase Kinase Kinase Protein gene family AT5G66850 71.472 2.26e-164 482.0
Pdy3g03030 ACH 7 345 MAP Kinase Kinase Kinase Protein gene family AT5G50180 79.472 0.0 552.0
Pdy3g03341 ACH 168 320 MAP Kinase Kinase Kinase Protein gene family AT1G79570 35.556 2.24e-25 110.0
Pdy3g03473 . 11 438 MAP Kinase Kinase Kinase Protein gene family AT1G14000 77.336 0.0 693.0
Pdy3g04022 . 1 1368 MAP Kinase Kinase Kinase Protein gene family AT3G13530 70.836 0.0 1942.0
Pdy3g04181 ACH 24 131 MAP Kinase Kinase Kinase Protein gene family AT5G57610 49.074 1.32e-29 112.0
Pdy3g04351 . 1 869 MAP Kinase Kinase Kinase Protein gene family AT5G11850 54.022 0.0 894.0
Pdy3g04777 . 5 871 MAP Kinase Kinase Kinase Protein gene family AT1G63700 57.048 0.0 844.0
Pdy4g00020 ACH 21 123 MAP Kinase Kinase Kinase Protein gene family AT5G57610 54.128 9.27e-28 115.0
Pdy4g00297 ACH 3 340 MAP Kinase Kinase Kinase Protein gene family AT4G26890 52.616 2.73e-114 337.0
Pdy4g00382 ACH 10 289 MAP Kinase Kinase Kinase Protein gene family AT5G55560 70.714 4.57e-161 449.0
Pdy4g00816 ACH 5 370 MAP Kinase Kinase Kinase Protein gene family AT5G55090 49.596 3.95e-113 339.0
Pdy4g00854 . 30 1146 MAP Kinase Kinase Kinase Protein gene family AT1G16270 47.289 0.0 925.0
Pdy4g01074 . 15 292 MAP Kinase Kinase Kinase Protein gene family AT5G55560 80.216 5.77e-176 486.0
Pdy4g01249 . 26 590 MAP Kinase Kinase Kinase Protein gene family AT4G08500 48.658 2.79e-159 468.0
Pdy4g01400 ACH 163 305 MAP Kinase Kinase Kinase Protein gene family AT2G35050 43.836 5.42e-32 125.0
Pdy4g01818 . 1 666 MAP Kinase Kinase Kinase Protein gene family AT1G09000 57.988 0.0 695.0
Pdy4g02047 . 7 700 MAP Kinase Kinase Kinase Protein gene family AT3G04910 55.108 0.0 698.0
Pdy4g02069 . 278 537 MAP Kinase Kinase Kinase Protein gene family AT2G17700 33.083 1.31e-50 181.0
Pdy4g02625 . 39 1163 MAP Kinase Kinase Kinase Protein gene family AT3G46920 42.349 0.0 788.0
Pdy4g02766 . 670 1054 MAP Kinase Kinase Kinase Protein gene family AT5G57610 73.402 0.0 604.0
Pdy4g02971 . 1 412 MAP Kinase Kinase Kinase Protein gene family AT4G31170 74.402 0.0 643.0
Pdy4g03456 ACH 130 336 MAP Kinase Kinase Kinase Protein gene family AT4G31170 29.596 3.52e-15 75.1
Pdy4g04161 . 188 420 MAP Kinase Kinase Kinase Protein gene family AT3G46930 25.746 9.85e-16 80.1
Pdy4g04244 . 9 438 MAP Kinase Kinase Kinase Protein gene family AT4G18950 64.747 0.0 575.0
Pdy4g04279 . 60 805 MAP Kinase Kinase Kinase Protein gene family AT3G58640 55.731 0.0 818.0
Pdy4g04433 . 23 152 MAP Kinase Kinase Kinase Protein gene family AT5G57610 47.445 1.38e-29 120.0
Pdy4g04567 . 1 345 MAP Kinase Kinase Kinase Protein gene family AT1G62400 86.087 0.0 614.0
Pdy5g00428 ACH 6 509 MAP Kinase Kinase Kinase Protein gene family AT3G48260 57.982 0.0 621.0
Pdy5g00453 . 11 304 MAP Kinase Kinase Kinase Protein gene family AT1G62400 64.094 1.12e-138 395.0
Pdy5g00461 . 1 385 MAP Kinase Kinase Kinase Protein gene family AT5G50000 82.519 0.0 674.0
Pdy5g01911 . 2 333 MAP Kinase Kinase Kinase Protein gene family AT5G01850 76.418 0.0 522.0
Pdy5g01995 . 218 448 MAP Kinase Kinase Kinase Protein gene family AT4G08470 29.362 3.00e-11 63.9
Pdy5g02290 . 30 378 MAP Kinase Kinase Kinase Protein gene family AT3G22750 64.873 2.06e-176 494.0
Pdy5g02383 ACH 67 273 MAP Kinase Kinase Kinase Protein gene family AT3G06030 27.778 4.00e-14 72.8
Pdy5g02436 . 721 1037 MAP Kinase Kinase Kinase Protein gene family AT1G04700 74.375 2.51e-168 522.0
Pdy5g02686 . 1 937 MAP Kinase Kinase Kinase Protein gene family AT4G24480 52.49 0.0 921.0
Pdy5g03126 ACH 23 380 MAP Kinase Kinase Kinase Protein gene family AT1G07150 47.581 3.82e-100 307.0
Pdy5g03257 . 309 558 MAP Kinase Kinase Kinase Protein gene family AT4G08470 31.058 3.42e-25 108.0
Pdy6g00224 . 1 539 MAP Kinase Kinase Kinase Protein gene family AT4G38470 62.706 0.0 683.0
Pdy6g01781 . 1 932 MAP Kinase Kinase Kinase Protein gene family AT1G08720 54.772 0.0 943.0
Pdy6g02017 ACH 1 355 MAP Kinase Kinase Kinase Protein gene family AT3G27560 73.538 0.0 546.0
Pdy6g02074 . 12 411 MAP Kinase Kinase Kinase Protein gene family AT3G01490 77.057 0.0 635.0
Pdy6g02357 . 309 623 MAP Kinase Kinase Kinase Protein gene family AT5G66850 66.032 2.11e-148 435.0
Pdy6g02408 ACH 1 344 MAP Kinase Kinase Kinase Protein gene family AT5G67080 50.0 4.19e-118 343.0
Pdy6g02604 . 71 458 MAP Kinase Kinase Kinase Protein gene family AT2G31800 33.165 1.15e-64 212.0
Pdy6g02614 . 174 515 MAP Kinase Kinase Kinase Protein gene family AT1G79570 27.47 5.99e-25 107.0
Pdy6g02789 . 19 587 MAP Kinase Kinase Kinase Protein gene family AT4G08500 47.315 3.30e-145 430.0
Pdy6g02953 . 52 611 MAP Kinase Kinase Kinase Protein gene family AT5G66850 49.47 8.85e-160 475.0
Pdy6g03186 . 1 346 MAP Kinase Kinase Kinase Protein gene family AT5G50180 73.121 0.0 548.0
Pdy6g03228 . 11 330 MAP Kinase Kinase Kinase Protein gene family AT1G62400 59.133 3.98e-137 392.0
Pdy6g03230 . 6 385 MAP Kinase Kinase Kinase Protein gene family AT5G50000 82.632 0.0 658.0
Pdy6g03489 . 3 265 MAP Kinase Kinase Kinase Protein gene family AT4G36950 40.288 5.61e-63 204.0
Pdy6g03498 . 1 276 MAP Kinase Kinase Kinase Protein gene family AT4G36950 43.581 1.37e-73 231.0
Pdy7g00208 . 67 273 MAP Kinase Kinase Kinase Protein gene family AT3G06030 26.852 9.17e-14 71.6
Pdy7g00252 . 1 609 MAP Kinase Kinase Kinase Protein gene family AT1G53570 55.13 0.0 601.0
Pdy7g00670 . 1 543 MAP Kinase Kinase Kinase Protein gene family AT4G38470 72.131 0.0 787.0
Pdy7g01113 . 1 532 MAP Kinase Kinase Kinase Protein gene family AT3G04910 62.852 0.0 649.0
Pdy7g01173 . 157 334 MAP Kinase Kinase Kinase Protein gene family AT4G31170 31.481 1.36e-22 100.0
Pdy7g01284 . 23 587 MAP Kinase Kinase Kinase Protein gene family AT4G08500 47.544 2.78e-145 429.0
Pdy7g01821 . 1 412 MAP Kinase Kinase Kinase Protein gene family AT4G31170 75.12 0.0 643.0
Pdy7g01934 . 1 639 MAP Kinase Kinase Kinase Protein gene family AT3G06030 57.377 0.0 683.0
Pdy7g02156 . 47 364 MAP Kinase Kinase Kinase Protein gene family AT3G63260 26.647 5.35e-25 105.0
Pdy7g02745 . 163 223 MAP Kinase Kinase Kinase Protein gene family AT5G40540 85.246 4.05e-31 109.0
Pdy8g00048 . 276 560 MAP Kinase Kinase Kinase Protein gene family AT4G08470 27.027 7.32e-17 83.2
Pdy8g00590 . 33 1010 MAP Kinase Kinase Kinase Protein gene family AT1G73660 56.543 0.0 1046.0
Pdy8g00795 . 1 821 MAP Kinase Kinase Kinase Protein gene family AT5G03730 62.5 0.0 976.0
Pdy8g01076 . 3 609 MAP Kinase Kinase Kinase Protein gene family AT1G53570 50.559 0.0 580.0
Pdy8g01633 . 220 471 MAP Kinase Kinase Kinase Protein gene family AT1G53570 30.588 3.20e-34 135.0
Pdy8g01723 . 79 175 MAP Kinase Kinase Kinase Protein gene family AT2G31800 36.0 3.62e-11 58.2
Pdy8g01905 . 68 384 MAP Kinase Kinase Kinase Protein gene family AT5G50000 49.074 7.03e-105 311.0
Pdy8g02132 ACH 1 336 MAP Kinase Kinase Kinase Protein gene family AT4G36950 53.448 1.22e-118 344.0
Pdy8g02349 . 7 345 MAP Kinase Kinase Kinase Protein gene family AT5G50180 78.717 0.0 555.0
Pdy9g00206 ACH 132 284 MAP Kinase Kinase Kinase Protein gene family AT5G50180 26.22 4.40e-09 57.0
Pdy9g00968 . 23 1054 MAP Kinase Kinase Kinase Protein gene family AT5G57610 51.174 0.0 908.0
Pdy9g01059 . 2 378 MAP Kinase Kinase Kinase Protein gene family AT3G22750 72.634 0.0 597.0
Pdy9g01327 . 6 259 MAP Kinase Kinase Kinase Protein gene family AT5G55090 48.12 3.06e-71 227.0
Pdy9g01347 ACH 74 255 MAP Kinase Kinase Kinase Protein gene family AT3G46920 39.011 8.79e-36 137.0
Pdy9g01418 . 25 588 MAP Kinase Kinase Kinase Protein gene family AT4G08500 46.141 1.38e-155 454.0
Pdy9g01543 ACH 18 153 MAP Kinase Kinase Kinase Protein gene family AT5G57610 43.571 2.53e-29 120.0
Pdy9g01742 ACH 5 360 MAP Kinase Kinase Kinase Protein gene family AT5G55090 46.26 9.22e-105 313.0
Pdy9g01782 ACH 10 289 MAP Kinase Kinase Kinase Protein gene family AT5G55560 72.143 2.16e-162 452.0
Pdy9g02064 ACH 6 390 MAP Kinase Kinase Kinase Protein gene family AT5G55090 47.739 1.60e-118 351.0
Pdy9g02184 . 616 1235 MAP Kinase Kinase Kinase Protein gene family AT1G79570 61.085 0.0 697.0
Pdy9g02253 . 580 878 MAP Kinase Kinase Kinase Protein gene family AT5G11850 74.916 3.67e-155 476.0
Pdy9g02746 . 8 727 MAP Kinase Kinase Kinase Protein gene family AT4G23050 42.333 0.0 552.0
Pdy9g02976 . 3 279 MAP Kinase Kinase Kinase Protein gene family AT3G13530 28.094 2.74e-28 120.0
Pdy9g02982 . 406 655 MAP Kinase Kinase Kinase Protein gene family AT1G63700 26.948 1.67e-23 105.0
Pdy9g03004 . 130 336 MAP Kinase Kinase Kinase Protein gene family AT4G31170 28.761 2.32e-14 72.8
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Pdy Pkinase 1.4e-51 CL0016 PK WNK_NRBP