Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pdy4g00385	ATGGATTTCTCAGAATCTACAAAAGTTGTATACGATAGAATCCAAAAGATAGAACCCGAAAATGTCTCCAAAATTATTGGGTATCTTCTTTTACAAGATCATGGTGAAAGAGAGATGATAAGATTAGCCTTTGGCCCTGATAATTTAATACACTCTTTGATCAATAAAGCCAAAATCCACCTCAAGTTACCTTCAAATGCAAACACTGGTCAACCGATTTCACCTTCTCAGGTCAACTCTATACACTTCACACCATTCTCTCCTCCGAGTCGGCGTTCCCCTTTGACTATCCAAGTCCCTACCCGTTGTTGTGATCCCCATGGCCACCCTGTTGAGTATGTTCCCATGGTTTACCCAGCTTCATATCCTGAAGATTATCGCCTTCACAACCACCTTCGTTTCTTGTCTCTAGAAGACCAGCTTGAGCCCATTAACAGCCCGGATTTTTCATCTAATAGTTACTACACATCAGAGCCCGCATTGGGTCCTAGAGCCAATAGGAGGTCTCCAAGTTTGCCCGAATTTCCTTTCAAAGTTTGCCATTACTTCATTAAAGGGTTTTGTAGGCATGGAAACAACTGTAGGTACTTCCATCCAACCCCTGAAAGCTTCTCTCAGATCTTTAGCCCGAATTTGAGCGAGGACGAACATGTCTTTTCACCTGGGTCTCTTGAGAAACTCGAGCTAGAACTCACTGAGTTACTGAAATCCAGAAGAGGGTTTCCTGTGTCCATAGCTTCTTTACCGATGATATATTATGAAAAATTCGGTAAAACACTACAAGCTGAAGGATATCTCACTGAAAGCCAACGACATGGAAAAGCTGGTTATAGTTTGACCAAGCTTCTTGCTCGCCTTAAGAGCATTTGTCTCATTGATAGGCCTCATGGTCAACATGCAGTCGTATTGGCTGATGATTTGGCAAAGTGTGTGGATCATAACGGGGATAGAAATGAACATGGTGGTATTGTGGCGGGTTCTAGACAAATATATTTGACTTTTCCAGCTGAGAGCACCTTTTCGGAGCGTGACGTTTTCAATTATTTCAACAAATTCGGGCATGTTCATGACGTTAGAATTCCTTGTCAGCAAAAGAGAATGTTCGGTTTTGTGACTTTTGTGTTTGCGGATACAGTTAGGCATATTTTAAACAAGGGAAACCCTCATTTTGTTAGCGGTGCACGTGTTTTGGTCAAACCTTACCGTGAAAAATGTAAGGTTGATGATAGGAAATATGGAGACGCGTATCAACATCCAATGTACCAAGGTTCCCACTGTCTTGATACCGAACTTGGTCTGCAGTCAATGCCCAGAATTTGTGATAATTCAAGGTTTATCAAGAAACAGTTCACCGATGAACAACATGAACAAGCATTTGAAGTTGAGAGAAGGCGTTTCTCCGATATGCACTTATCAACAGATCCCAATAACCAAATGCCGAGTTTTGGAAACTCACTTGAAGATTTGATGATATCAGAAGGCAGTGCACTTGCACTAAAAATGGACTTCGCTTCAACTGGGCGTTTCAATTATTATTTAGATGTTTTAAACAACGGCGCCCCTAGTGATCAAACAATTAGTCAGATCAATACCAAATACAGTGAACAAGAGAGTAGCCAGGGAGGACTGAATCTACCAGACAGCCCGTTTGCTTCTGCATTAGGTGGCGAAATACCAACAGTTATATAA	1689	41.62	MDFSESTKVVYDRIQKIEPENVSKIIGYLLLQDHGEREMIRLAFGPDNLIHSLINKAKIHLKLPSNANTGQPISPSQVNSIHFTPFSPPSRRSPLTIQVPTRCCDPHGHPVEYVPMVYPASYPEDYRLHNHLRFLSLEDQLEPINSPDFSSNSYYTSEPALGPRANRRSPSLPEFPFKVCHYFIKGFCRHGNNCRYFHPTPESFSQIFSPNLSEDEHVFSPGSLEKLELELTELLKSRRGFPVSIASLPMIYYEKFGKTLQAEGYLTESQRHGKAGYSLTKLLARLKSICLIDRPHGQHAVVLADDLAKCVDHNGDRNEHGGIVAGSRQIYLTFPAESTFSERDVFNYFNKFGHVHDVRIPCQQKRMFGFVTFVFADTVRHILNKGNPHFVSGARVLVKPYREKCKVDDRKYGDAYQHPMYQGSHCLDTELGLQSMPRICDNSRFIKKQFTDEQHEQAFEVERRRFSDMHLSTDPNNQMPSFGNSLEDLMISEGSALALKMDFASTGRFNYYLDVLNNGAPSDQTISQINTKYSEQESSQGGLNLPDSPFASALGGEIPTVI	562

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pdy4g00385	562	Pfam	RNA recognition motif	340	387	IPR000504	GO:0003723(InterPro)
	Pdy4g00385	562	FunFam	zinc finger CCCH domain-containing protein 53-like isoform X2	335	406	-	-
	Pdy4g00385	562	Gene3D	-	174	254	-	-
	Pdy4g00385	562	SMART	c3hfinal6	176	200	IPR000571	GO:0046872(InterPro)
	Pdy4g00385	562	SUPERFAMILY	CCCH zinc finger	177	199	IPR036855	GO:0046872(InterPro)
	Pdy4g00385	562	SUPERFAMILY	RNA-binding domain, RBD	340	417	IPR035979	GO:0003676(InterPro)
	Pdy4g00385	562	ProSiteProfiles	Zinc finger C3H1-type profile.	174	201	IPR000571	GO:0046872(InterPro)
	Pdy4g00385	562	PANTHER	RNA-BINDING (RRM-RBD-RNP MOTIFS)	1	553	-	-
	Pdy4g00385	562	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	328	403	IPR000504	GO:0003723(InterPro)
	Pdy4g00385	562	SMART	rrm1-1	329	399	IPR000504	GO:0003723(InterPro)
	Pdy4g00385	562	Gene3D	-	334	407	IPR012677	-
	Pdy4g00385	562	ProSiteProfiles	OST-type HTH domain profile.	223	306	IPR025605	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pdy4g00385	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	132642	Pdy4g00385	Pdy9g01786

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Pdy	Pdy-Chr2:106708898	Pdy4g00385	Pdy-Chr4:7398746	dispersed
	Pdy	Pdy-Chr4:7398746	Pdy8g00827	Pdy-Chr8:34702172	dispersed
	Pdy	Pdy-Chr3:9819964	Pdy4g00385	Pdy-Chr4:7398746	transposed
	Pdy	Pdy-Chr4:7398746	Pdy9g01786	Pdy-Chr9:40968916	wgd