AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00396 ATGGCGAGACAAATCAGCCCCTGTTCTTCATCTTCCACCACCTTCTCACCTTCTTCACCGATTCAAGAAAACTTTTGTTCTGCAAAATTCTTCAAGTTTTCAAGGAAATCATCTCCCTCCAGATGGGTTTTCAAGATTCACTCAAAAATCAATACCAAAAACCAGTTTGAACTCAAATCCTCAAATGGGTATCCTTTGAATGCAGTTTCTTTGCAGAATGTTGATTCAAACAAAGTTATAAATGAATCAGCTCTGTCTTCTATCAAACCGCTCAGACGCTTGTTCTTGATTTCCTGTTATCATTTTCTGCTGGCTTTTCGAGTAGGTGCAGCCGAGAAGCCTTTTGCTAGAGAAACTGAGTTACTAAAACAAACCGAATCCAATCTTAGTGTGACTGTTGTGGGTGCTTCAGGCGATCTTGCCAAGAAAAAGATATTTCCTGCCCTTTTTGCTCTTTTTTATGAAGATTATTTACCTCAGAATTTTACTATATTTGGTTATGCACGAACCAAAATGACCGATGAGGAGCTGAGGGAAACGATTAGTAGAACATTAACTTGCAGAATTGATAAGAGAGAGAACTGTGGTGACAAAATGGAAGAGTTTCTTGGAAGATGCTTTTACCATTCGGGTCAATACAACTCTGAAGAAAATTTTGCTGAGCTGGACAATAAGCTAAAGCAGAAAGAGGGTGGAAAAGTGTCAAATAGGTTGTTTTATTTGTCAATACCTCCAGATATCTTTGTGGACGTGGTACGTTGTGCTAGTGGAAAAGCTTCTTCCAAAGACGGGTGGACAAGGGTAATTGTGGAAAAACCATTTGGGCGTGACTCACAATCCTCCGGCGAGTTAACAAAGAGCTTGAAGCAGTACTTGGCCGAGGATCAAATATTTAGGATTGATCATTATCTGGGCAAGGAGCTTGTGGAGAATTTATCAGTTCTTCGCTTCTCAAATCTTGTTTTTGAACCGCTTTGGTCAAGAAATTACATTCGAAATGTACAGTTCATATTTTCAGAAGATTTTGGTACAGAAGGACGAGGAGGATACTTTGACAACTATGGAATCATCCGTGATATAATGCAAAACCACCTCCTGCAAATATTAGCATTGTTTGCTATGGAAACACCCGTGAGTCTTGATGCTGAGGACATTAGAAACGAAAAGGTCAAAGTTTTGAGGTCAATGAGACGCCTAAAGCTTGAAGATGTAGTCATTGGTCAATACAAGGGTCATAGCAAAGGCGGGAAGACGTATTTAGGATACACAGAGGACCCCACAGTCCCGAACGATAGCCTCACTCCTACTTTTGCAGCAGCGGCTCTCTTTATTGACAATGCCCGGTGGGATGGCGTTCCTTTTCTTATGAAAGCCGGGAAGGCCCTCAATACTAGACGGGCAGAGATCAGAGTTCAATTCAGACATGTTCCGGGTAACCTATACAAGAAAAACTTTGGGATGGATATGGATAAGGCTACAAACGAGCTCGTGCTTCGTGTGCAGCCAGATGAAGCCATTTATCTCAAGATCAATAACAAGATTCCTGGTCTCGGGATGAGGCTCGACCGAAGTGACCTTAATTTGCTTTATAGTACGAGGTACCCGAAGGAAATCCCGGATGCATATGAGAGGCTCTTGCTGGATGCAATAGAAGGAGAAAGAAGATTGTTCATAAGAAGCGATGAACTCGATGCTGCTTGGTCTATATTCACACCATTATTGAAAGAACTCGAAGCAAAGAAGATTGCACCGGAACTGTATCCTTATGGCAGCAGAGGGCCGGTCGGAGCTCATTATCTGGCGGCAAACTACAATGTCCGGTGGGGAGATCTTGCCGGAGATGAATGA 1848 42.26 MARQISPCSSSSTTFSPSSPIQENFCSAKFFKFSRKSSPSRWVFKIHSKINTKNQFELKSSNGYPLNAVSLQNVDSNKVINESALSSIKPLRRLFLISCYHFLLAFRVGAAEKPFARETELLKQTESNLSVTVVGASGDLAKKKIFPALFALFYEDYLPQNFTIFGYARTKMTDEELRETISRTLTCRIDKRENCGDKMEEFLGRCFYHSGQYNSEENFAELDNKLKQKEGGKVSNRLFYLSIPPDIFVDVVRCASGKASSKDGWTRVIVEKPFGRDSQSSGELTKSLKQYLAEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRNVQFIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRRLKLEDVVIGQYKGHSKGGKTYLGYTEDPTVPNDSLTPTFAAAALFIDNARWDGVPFLMKAGKALNTRRAEIRVQFRHVPGNLYKKNFGMDMDKATNELVLRVQPDEAIYLKINNKIPGLGMRLDRSDLNLLYSTRYPKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSIFTPLLKELEAKKIAPELYPYGSRGPVGAHYLAANYNVRWGDLAGDE 615
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00396 615 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 124 607 IPR001282 GO:0004345(PANTHER)|GO:0006006(PANTHER)|GO:0006006(InterPro)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Pdy4g00396 615 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 301 307 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
Pdy4g00396 615 NCBIfam glucose-6-phosphate dehydrogenase 129 608 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Pdy4g00396 615 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 125 314 IPR036291 -
Pdy4g00396 615 FunFam Glucose-6-phosphate 1-dehydrogenase 125 299 - -
Pdy4g00396 615 Gene3D - 111 299 - -
Pdy4g00396 615 PRINTS Glucose-6-phosphate dehydrogenase signature 343 360 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Pdy4g00396 615 PRINTS Glucose-6-phosphate dehydrogenase signature 448 474 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Pdy4g00396 615 PRINTS Glucose-6-phosphate dehydrogenase signature 291 319 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Pdy4g00396 615 PRINTS Glucose-6-phosphate dehydrogenase signature 361 377 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Pdy4g00396 615 PRINTS Glucose-6-phosphate dehydrogenase signature 267 280 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Pdy4g00396 615 Coils Coil 382 402 - -
Pdy4g00396 615 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 301 608 - -
Pdy4g00396 615 Gene3D Dihydrodipicolinate Reductase; domain 2 300 609 - -
Pdy4g00396 615 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 128 610 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Pdy4g00396 615 FunFam Glucose-6-phosphate 1-dehydrogenase 300 609 - -
Pdy4g00396 615 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 133 311 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Pdy4g00396 615 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 314 608 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00396 K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr2:8846411 Pdy4g00396 Pdy-Chr4:7570033 dispersed
Pdy Pdy-Chr4:7570033 Pdy6g01974 Pdy-Chr6:56627579 dispersed
Pdy Pdy-Chr4:7570033 Pdy3g03062 Pdy-Chr3:88176720 transposed