AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pdy4g00425 | ATGAACCAAGTCACCAACGAAAACCTCATCGATTGCTTGCATACTTTTACAGTAAATTTCCTTCTGGTAATTGCAGCAAAGTTAAATTCAAGCGATATAAAACTTTCTCTTCGTAATCCATCATCTTCCTCAGGTGCTTCAGAAGTTTTAAGGGATAAAGCTAGAAGTGCATTCCAAACAAGATCTATAACTAGTATGGCAGTAAATATCGAAAGTTCATCAACGAATCCAGCAAATGAAGTCGATCAGGTTGATATGCTCAACGCTTCTTATGATGCTTTCGAAGGAGTTATTATAGATGTTAAAGAGGACATGGATGAAACTGTTTTTTCCACTTTACTTCAAACATCGATATCCCAATGGAGACAGCAGGGAAAGAAGGGCGTGTGGCTTAAACTGTCTCTTGAACTTGTGAATCTTGTTAAGCCTGCAGTAAAGGAAGGATTTTGGTACCATCATGCTGAACCAGCGTACTTGATGCTTGTATATTGGATTCCTAAAACTAATCATACTCTCCCGCCAAATGCTTCTCATCGAGTTGGTGTTGCTGCTTTTGTTGTGAACGATAAAGGGGAGGTTCTTGTGGTTCAAGAGAAAAGTGGTGCATTCAAAGGCACAGGAGTCTGGAAATTACCAACTGGTACTGTTGAGGAGGGTGAAGATATATGTGCAGCTGCAATCAGGGAAGTCAAAGAAGAGACCGGAATTGATTCAGAATTCATGGAAGTCCTTGCATTCAGGCATAGCCACAAGTCTTTCTTTAGCAAGTCCGATCTAATGTTCGTGTGTATGTTAAAACCAACGTCTTCGTATATTGAAAAGCAAGATTCAGAGATTGAAGCAGCACAGTGGATGCCAGTAGAAGAATATGCCAATCAGCCCTTTGTAAAGAAACATAAATCGTTCGACTACATCGCCAAAATATGCATTGCGAAAAAAGATAACAAATATGTTGGCTTTCCTGCATTGCCTACAGCAACTGCTACATCTGCTAAAAAGAGCTATTTGTATTCCAATTATCATGAATCTGATGCATAA | 1038 | 39.4 | MNQVTNENLIDCLHTFTVNFLLVIAAKLNSSDIKLSLRNPSSSSGASEVLRDKARSAFQTRSITSMAVNIESSSTNPANEVDQVDMLNASYDAFEGVIIDVKEDMDETVFSTLLQTSISQWRQQGKKGVWLKLSLELVNLVKPAVKEGFWYHHAEPAYLMLVYWIPKTNHTLPPNASHRVGVAAFVVNDKGEVLVVQEKSGAFKGTGVWKLPTGTVEEGEDICAAAIREVKEETGIDSEFMEVLAFRHSHKSFFSKSDLMFVCMLKPTSSYIEKQDSEIEAAQWMPVEEYANQPFVKKHKSFDYIAKICIAKKDNKYVGFPALPTATATSAKKSYLYSNYHESDA | 345 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pdy4g00425 | 345 | SUPERFAMILY | Nudix | 145 | 307 | IPR015797 | - | |
| Pdy4g00425 | 345 | Gene3D | - | 84 | 169 | - | - | |
| Pdy4g00425 | 345 | PANTHER | NUDIX HYDROLASE RELATED | 59 | 342 | IPR003293 | GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER) | |
| Pdy4g00425 | 345 | Pfam | Nudix hydrolase domain | 87 | 165 | IPR040618 | - | |
| Pdy4g00425 | 345 | Pfam | NUDIX domain | 178 | 301 | IPR000086 | - | |
| Pdy4g00425 | 345 | CDD | Nudix-Hydrolase-12 | 178 | 309 | - | - | |
| Pdy4g00425 | 345 | FunFam | nudix hydrolase 2 | 84 | 170 | - | - | |
| Pdy4g00425 | 345 | FunFam | Nudix hydrolase 8 | 179 | 317 | - | - | |
| Pdy4g00425 | 345 | PRINTS | Anti-sense to fibroblast growth factor protein GFG signature | 235 | 258 | IPR003293 | - | |
| Pdy4g00425 | 345 | PRINTS | Anti-sense to fibroblast growth factor protein GFG signature | 175 | 193 | IPR003293 | - | |
| Pdy4g00425 | 345 | PRINTS | Anti-sense to fibroblast growth factor protein GFG signature | 263 | 287 | IPR003293 | - | |
| Pdy4g00425 | 345 | PRINTS | Anti-sense to fibroblast growth factor protein GFG signature | 137 | 155 | IPR003293 | - | |
| Pdy4g00425 | 345 | Gene3D | Nucleoside Triphosphate Pyrophosphohydrolase | 179 | 316 | - | - | |
| Pdy4g00425 | 345 | ProSitePatterns | Nudix box signature. | 214 | 235 | IPR020084 | GO:0016787(InterPro) | |
| Pdy4g00425 | 345 | ProSiteProfiles | Nudix hydrolase domain profile. | 177 | 309 | IPR000086 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pdy4g00425 | K26956 | ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22] | ||||
| Pdy4g00425 | K03574 | 8-oxo-dGTP diphosphatase [EC:3.6.1.55] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pdy | Pdy-Chr3:6786676 | Pdy4g00425 | Pdy-Chr4:8036865 | dispersed | |
| Pdy | Pdy-Chr1:67890534 | Pdy4g00425 | Pdy-Chr4:8036865 | transposed | |
| Pdy | Pdy-Chr2:3016569 | Pdy4g00425 | Pdy-Chr4:8036865 | transposed | |
| Pdy | Pdy-Chr4:98807159 | Pdy4g00425 | Pdy-Chr4:8036865 | transposed | |
| Pdy | Pdy-Chr6:4327201 | Pdy4g00425 | Pdy-Chr4:8036865 | transposed | |
| Pdy | Pdy-Chr3:6702892 | Pdy4g00425 | Pdy-Chr4:8036865 | wgd |