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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00452 ATGGCGAAGCAAAAGATTGTCGTGAAAGTAACCATGAGCAACGAAAAGAAATGTCGTAAGGCGCTGAAGATTGCCGTTAGTATCTCCGGAGTTGAATCGGCGTCATTTACTGGTTCAGATAAAGAGCAGATAGCAGTTACCGGTGAAGGAATAGACTCGGTGAAGCTAACAACGATGCTAAGGAAAGGTGTAGGATACACGGAGCTACTGAGCGTGGGTCAGGTGGAAGAGAAGAAACCTGAAGCCCCAAAGGCAGCGGCTACGGCGGTGCCACTGCAAATAAATCCATACGAGTACTACTACTACTACAATGGCTATGGCACTCCTTATCACTCATATGACATGCGAGATTTCATCTATTAA 363 46.01 MAKQKIVVKVTMSNEKKCRKALKIAVSISGVESASFTGSDKEQIAVTGEGIDSVKLTTMLRKGVGYTELLSVGQVEEKKPEAPKAAATAVPLQINPYEYYYYYNGYGTPYHSYDMRDFIY 120
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00452 120 PANTHER OS04G0464100 PROTEIN 4 85 IPR044296 -
Pdy4g00452 120 Gene3D - 1 78 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00452 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:8465396 Pdy4g00454 Pdy-Chr4:8500742 dispersed
Pdy Pdy-Chr4:8436945 Pdy4g00452 Pdy-Chr4:8465396 proximal
Pdy Pdy-Chr4:8465396 Pdy4g00453 Pdy-Chr4:8496955 tandem