AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pdy4g00475 | ATGATGCTTCGAGTTTTTAAAAAAGTGCCTTCGAATCGAGTCATCGGCCGTCGGCGGATGAGCAACACCGCCACCGTAATGAGTTTTGGAGACGGTAGCCACGGTGCTCTAGGCTTACCCACTTCCGTCACCGGTATAAATTCTGACGCATATGAACCAACTCCAATCTCAGCCCTACCTCCCGACGTTTCCAGCATCGCCGCCGGTCACTACCACTCTCTCGCCGTTACTTCTCAAGGCCACCTCTGGTCATGGGGCCGAAATGCTGAATCCCAACTTGGGCGTGCCCTTGATTCCCCAAGAGAAACATGGCTCGAACCACAAAGGATAAACGGGCTCAGTGGTGTCCGATCAGCATCTGCATCAGGTGTTGTATCTGCAGCCATTGGAATCGATGGGTCCTTATGGGTTTGGGGGAAATCGAAGCGTGGTCAATTGGGTCTCGGAATTGGAATCACAGAGGCTGTTCTTCCCTCCAGGATTAAAATTCTTGATAAAGAAGAGATAATTAAGGTCTCATTTGGATGGGGGCATGCTCTTGCACTTACTAAAGATGGTAAGTTATTTCGTTGGGGTTATTCAGCAGATGGTAGATTAGGAAAGAGAGGAGTTATGGGGGCTTCACCACTCGATTCAAAGGCTAATTTGTCTTCAAGTTTAAAACTTGAAGATGCAGAGAAACTAGTCTTGGAAGCTATGAATAAGGAGGACGATATGCCTATTATCTGGGAGCCTTGTTTGATTGACGAACTAAAAGATGTGGAAGTTGCAGACGTGTCATGTGGGCTTGACCACACCTTGGTTCTTCTACGTGATGGAACCTTACTTAGTGGTGGAAGCAATGTGTACGGGCAGTTGGGTAGATCAAAACAAGATATGGAGTTCCTTTCAGTTGACATAAGTGTCCACCCTGTCTCTATTGCTTCAGGGTTAGGCCATTCTTTGGCAATATGCCAGATCCCATCTGCAGATGGTGGTAAAGGCATCTCGGGCGTCTTTTCATGGGGTTGGGGTCAGAATTCTCAACTCGGGCGTGAAGGCCCAACACACATCCCATTGCTTGTGGATGGCCTTTTAGGAGAAAACTCATTGTCAGTGTCAGGGGGGCGTGTGCACTCCATTTCTCTCACTAGCAATGGAGATCTCTTTTCATGGGGGTGTGGTAGAAGTGGGAGGCTTGGATTGGGCAGTTCTGTAGATGAGCCTGAACCCATGCTAGTTGAGTTTCCAGAAGGGACAGACGTTTTGCAAGCTGTTGCAGGGTTCGATCATACTCTAGTCTTAACCAGGAAATGA | 1296 | 48.15 | MMLRVFKKVPSNRVIGRRRMSNTATVMSFGDGSHGALGLPTSVTGINSDAYEPTPISALPPDVSSIAAGHYHSLAVTSQGHLWSWGRNAESQLGRALDSPRETWLEPQRINGLSGVRSASASGVVSAAIGIDGSLWVWGKSKRGQLGLGIGITEAVLPSRIKILDKEEIIKVSFGWGHALALTKDGKLFRWGYSADGRLGKRGVMGASPLDSKANLSSSLKLEDAEKLVLEAMNKEDDMPIIWEPCLIDELKDVEVADVSCGLDHTLVLLRDGTLLSGGSNVYGQLGRSKQDMEFLSVDISVHPVSIASGLGHSLAICQIPSADGGKGISGVFSWGWGQNSQLGREGPTHIPLLVDGLLGENSLSVSGGRVHSISLTSNGDLFSWGCGRSGRLGLGSSVDEPEPMLVEFPEGTDVLQAVAGFDHTLVLTRK | 431 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pdy4g00475 | 431 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 22 | 429 | IPR051210 | - | |
| Pdy4g00475 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 24 | 79 | IPR000408 | - | |
| Pdy4g00475 | 431 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 259 | 269 | IPR000408 | - | |
| Pdy4g00475 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 63 | 92 | - | - | |
| Pdy4g00475 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 256 | 285 | - | - | |
| Pdy4g00475 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 80 | 132 | IPR000408 | - | |
| Pdy4g00475 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 273 | 320 | IPR000408 | - | |
| Pdy4g00475 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 186 | 272 | IPR000408 | - | |
| Pdy4g00475 | 431 | Gene3D | - | 327 | 431 | IPR009091 | - | |
| Pdy4g00475 | 431 | SUPERFAMILY | RCC1-BLIP-II | 22 | 430 | IPR009091 | - | |
| Pdy4g00475 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 133 | 185 | IPR000408 | - | |
| Pdy4g00475 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 330 | 379 | IPR000408 | - | |
| Pdy4g00475 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 132 | 182 | IPR000408 | - | |
| Pdy4g00475 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 379 | 428 | IPR000408 | - | |
| Pdy4g00475 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 332 | 375 | IPR000408 | - | |
| Pdy4g00475 | 431 | Gene3D | - | 230 | 317 | IPR009091 | - | |
| Pdy4g00475 | 431 | Gene3D | - | 14 | 223 | IPR009091 | - | |
| Pdy4g00475 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 25 | 41 | IPR000408 | - | |
| Pdy4g00475 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 63 | 76 | IPR000408 | - | |
| Pdy4g00475 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 82 | 98 | IPR000408 | - | |
| Pdy4g00475 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 375 | 396 | IPR000408 | - | |
| Pdy4g00475 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 172 | 188 | IPR000408 | - | |
| Pdy4g00475 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 188 | 202 | IPR000408 | - | |
| Pdy4g00475 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 133 | 149 | IPR000408 | - | |
| Pdy4g00475 | 431 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 66 | 76 | IPR000408 | - | |
| Pdy4g00475 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 380 | 431 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pdy4g00475 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pdy | Pdy-Chr4:8775370 | Pdy8g02604 | Pdy-Chr8:61965562 | dispersed | |
| Pdy | Pdy-Chr4:8775370 | Pdy7g01119 | Pdy-Chr7:48196990 | transposed |