AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00480 ATGAGGGAAGAAGGAATCAGCTCATCGGGGGACCCGTTACTTTTTCCCAATTCTCCTCCTCCTACCGCTGCTGCCAGCTCCGCTGGTGCATCATCACCAGCTTTTGCCAATGCTGGCAGTACAGATTGGTTGGGTCATGGTCAGGGATCCAAAGCTGGTTCACTATCTCGGATTAGTTCACAGCCTGTTTGGATTTCAGTGAGCACAAGTGTTGGTGGTTCAGCTCTTGGCTCCTCTCATCCTTCATGTAGACCATGGGAAAGGGGTGATCTTTTAAGACGATTGTCCACATTTAGTCCTGCAAATTGGTTTGGAAAACCGAAGGCGGCTAGTCCACTTGCTTGTGCTAGGAGAGGCTGGGTGAATGTGGATGTTGATAAGATTCAATGCGAGTCTTGTGGCACAAACTTGAAATATAATGCACTGGGTTCACGGGCTCCGACAGAAGGTGAAAATGGTGGAGAAGAATTTGCCAACCAACTTGATGAAGGACACAATGCCACCTGTCCTTGGAGAGGAAACAGTTGTGCCGAAAGTTTAGTACAATTCCCTCCTACTCCACCGTCAGCTCTGATTGGTGGTTATAAGGACCGTTGTGATGGACTTCTTCAGTTTCCTTATCTACCCATTGTGGCTGCTTCAGCTGTCGACCAAATGAAGCTTTCTAGAGGCGTGGAAATTGACCGCTTTCTAGACCCTGCATCTGATATGGAAATACACATATATTCACGTGCCCAGAAATTGATAAGCCTTTGTGGATGGGAGCCAAGATGGCTTCCGAATGTTCAAGATTGTGAAGAGCATTCAGCTCAATCGGCAAGGAATGGTGGTTCCTTCAGTCCTATTAGAGATCATGACCCTAACAAGAAAATTTTATCTGCTTCAACCAAAAAAGGTTCAAGGGTCCCTTCAAAATCTGATTCTGGATCACCGATGTTAGATTGTAGTCTGTGTGGTGCCACAGTGAGAATCTTGGACTTCATTCGTGTCAGCCGTCCTACTCGTTTTGCTCCTAATAACATTGATGTTCCCGAAACAAGTAAAAAAATGGCACTCACTCGTGGAGTAAGTGCTGCTAGCGGGATTAGTGGTTGGGTTGCTGCTGACGGGACGGAAGATGAACAAACAGAGGATGTGGATGAAGCTGCAACTACAGGGGAGGGGAAGTCAATGTCAAATATTGGGGTGGATTTAAATCTTACGATGGGAAGTGGGTTTTCTACAGGACACGGGCACAAGAGACCAATATCTGAACTATACCAAGATGCAAATATAGGGCGGGATCTGAACATCGGGCAGCCAGCTGGCAGTGAGGTTGGTGATCGTGCAGCATCATATGAATCCCGGGGACCTACTTTCAAGAGGAACATGGATGAAGGTGGGTCCACAGTCGATAGGCCACATGGGTTGGTTCGCCAGGCAGATAGTGTCGAGGGTGTTGTCATTGACCGTGATGGTGATGAAGTAGACGATAGCAAGATGTCACCAGGTCCTTCTAAACGTGCACGTGATTCGCACTCTTTTGAACCGTACGAGCCATCATCTGGTGCGGGTCCGAGCCAGACCTTGTATTTTGATATCGGAAGGGCTGACCCTGGTCCTTCGAGCCAAGGCCATGAACATGGAGCAAGAGCTTCCTCAGTTATTGCAATGGATACAATTTGTCATAGTGAAGATAATGATTCGATGGAAAGTGTTGAAAATCATCCAGGATTTGTCGATGAAGTCAATTTTCCTTCTGGGTCAGGGGTCAAAAGTCCTGATCCTGTTGAAACTTCAGATCTGAATGTTAGCATACAGGCTCAACAAAGCACGTGCCCACCTGCGGTTCGAGTCACTGGTGAGATTGGTGTTAGCAGCACCAACAATGAAGAAGTACTGAACAATGACACTGCCACGGTTCATGGCCGGGATGGCCCTAGCTTTGGTGTTAGTGGTGGTAGTGTTGGAATGGGTGTCAGTCATGAAGCTGAGATTCATGGTTCTGATGCTTTGATTCATAGGACAGAAAGTGTTGTTGGTGACATGGAACCAGTTAATGGAGTGACTGAGAATCATGGTCAAACTGATGAATCTGTTCCTGAGGAACTGCAACAAGAATATTCTGGAAGGGCGGACAGTGGGTCAAAGATTGTTGGTTCGGTCAAAGCAGAATCTGTTGAGAGTGGCGAGAAAACCAGTGACTTGAATCTTTTACCCCATGAATCCCACCCTTCTCTTTCTTGCAACGCGGTCGTATTTTCTGGTTTAGAAGCATCAAAAGACGAAGTTATGCAGGCAGGCAAATCATCTCCTACTGGAGAATGTGGCTATCCAAGTTATCCACCTGCAAATGGGATAGGGCCAATTGGAGAAAGCAACTTTGAAGAAGCCGTGGAGTTTGATCCAATAAAGCATCATAACTTTTTCTGCCCTTGGGTGAACGGGAATGTTGCTGCAGCTGGAGTTGTTAACAACAGTAATAACAGTGCCAGTTCCAGTGCTGCTTTAGCCCATTGTGGCTGGCAGCTAACCTTAGATGCTTTAAATGGTTTCCAAGGCCCTGAACAAAATCAAACCGTTGAATCTGAGTCAGCTGCTTCTTTATACAAGGATGATCATCAAGGTTCTAAAAAGCTCATGGCACGCCACTCCTTCAACAGAAGCCGTGGCAAAAACTGA 2661 46.67 MREEGISSSGDPLLFPNSPPPTAAASSAGASSPAFANAGSTDWLGHGQGSKAGSLSRISSQPVWISVSTSVGGSALGSSHPSCRPWERGDLLRRLSTFSPANWFGKPKAASPLACARRGWVNVDVDKIQCESCGTNLKYNALGSRAPTEGENGGEEFANQLDEGHNATCPWRGNSCAESLVQFPPTPPSALIGGYKDRCDGLLQFPYLPIVAASAVDQMKLSRGVEIDRFLDPASDMEIHIYSRAQKLISLCGWEPRWLPNVQDCEEHSAQSARNGGSFSPIRDHDPNKKILSASTKKGSRVPSKSDSGSPMLDCSLCGATVRILDFIRVSRPTRFAPNNIDVPETSKKMALTRGVSAASGISGWVAADGTEDEQTEDVDEAATTGEGKSMSNIGVDLNLTMGSGFSTGHGHKRPISELYQDANIGRDLNIGQPAGSEVGDRAASYESRGPTFKRNMDEGGSTVDRPHGLVRQADSVEGVVIDRDGDEVDDSKMSPGPSKRARDSHSFEPYEPSSGAGPSQTLYFDIGRADPGPSSQGHEHGARASSVIAMDTICHSEDNDSMESVENHPGFVDEVNFPSGSGVKSPDPVETSDLNVSIQAQQSTCPPAVRVTGEIGVSSTNNEEVLNNDTATVHGRDGPSFGVSGGSVGMGVSHEAEIHGSDALIHRTESVVGDMEPVNGVTENHGQTDESVPEELQQEYSGRADSGSKIVGSVKAESVESGEKTSDLNLLPHESHPSLSCNAVVFSGLEASKDEVMQAGKSSPTGECGYPSYPPANGIGPIGESNFEEAVEFDPIKHHNFFCPWVNGNVAAAGVVNNSNNSASSSAALAHCGWQLTLDALNGFQGPEQNQTVESESAASLYKDDHQGSKKLMARHSFNRSRGKN 886
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00480 886 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 884 - GO:0005634(PANTHER)
Pdy4g00480 886 MobiDBLite consensus disorder prediction 478 508 - -
Pdy4g00480 886 MobiDBLite consensus disorder prediction 1 42 - -
Pdy4g00480 886 MobiDBLite consensus disorder prediction 20 38 - -
Pdy4g00480 886 MobiDBLite consensus disorder prediction 433 544 - -
Pdy4g00480 886 MobiDBLite consensus disorder prediction 854 886 - -
Pdy4g00480 886 Pfam C3HC zinc finger-like 85 207 IPR012935 GO:0008270(InterPro)
Pdy4g00480 886 MobiDBLite consensus disorder prediction 293 310 - -
Pdy4g00480 886 MobiDBLite consensus disorder prediction 269 310 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00480 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
132658 Pdy4g00480 Pdy9g01826
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:8886102 Pdy9g01826 Pdy-Chr9:41551018 dispersed