AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pdy4g00499 | ATGGTTGTTCTCTCAAAGCCTCCGATGGATCAGTTCTTCCCCAAAACCATTATACCAAACTCAAACCCATTAATCATTCCTGATATCCCTCTCATTGACCTTTCAAAACCAGAATCAAAACACCATCTTGTTAAGGCCTGTCAAGATTTCGGGTTTTTTAAGGTCGTTAATCATGGAATTCCTACAAAATTCATCACTAAACTCGAAGCAGAGGCGGTTAAGTTCTTCTCTTATCCTCTTTCTGTCAAAGAACAATCCGGACCACCCAACCCGTTTGGTTACGGGAATAAAAGCATTGGCAGAAACGGGGATGTTGGGTGGGTTGAGTACCTTCTTCTCAATGCGAAACCCGGCTCGGATTACCCGGAAAACTTCCAAGATGCTGTTAATGATTACGTGACATCAGTGAAGACGATGGCTTGCGATATTCTTGAGTTATTAGCAGATGAAATGAAACTGCAGCCAAGGAATGTGTTTAGTAAGCTGCTGATGGATGAACAGAGTGACTCTGTTTTTCGGATAAATCATTACCCACCTTGCCCGGAGTTTCAAGAAAACGAAAGAAATGGCCGGAAACTGGTGGGGTTTGGAGAACACACAGACCCACAAATCATCTCGGTTTTGCGATCTAACAACACATCTGGGCTTGAAATCTCGTTGAGAGATGGAAGTTGGATGTCTGTTCCTCCAGATTCTGACTCTTTCTTTATCAATGTTGGCGATTCTTTACAGGTGATGACCAATGGAAGATTCAAGAGTGTGAAGCATAGGGTGGTGGCAAATGGAACAAAGAGTAGAGTCTCAATGATATATTTTGGTGGACCACCGTTGAGCGAGAGAATAGCACCATTGCCATCGCTTATGCAAGGAGAGGAGGATAGCTTGTACAAGGAATTCACTTGGTTCGAGTATAAGAAGTCCGCGTTTAATTCAAGACTATCTGATAACAGACTCGGCTTGTTTGAGAAAATTATCGCATCTTAG | 984 | 42.78 | MVVLSKPPMDQFFPKTIIPNSNPLIIPDIPLIDLSKPESKHHLVKACQDFGFFKVVNHGIPTKFITKLEAEAVKFFSYPLSVKEQSGPPNPFGYGNKSIGRNGDVGWVEYLLLNAKPGSDYPENFQDAVNDYVTSVKTMACDILELLADEMKLQPRNVFSKLLMDEQSDSVFRINHYPPCPEFQENERNGRKLVGFGEHTDPQIISVLRSNNTSGLEISLRDGSWMSVPPDSDSFFINVGDSLQVMTNGRFKSVKHRVVANGTKSRVSMIYFGGPPLSERIAPLPSLMQGEEDSLYKEFTWFEYKKSAFNSRLSDNRLGLFEKIIAS | 327 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pdy4g00499 | 327 | Gene3D | - | 8 | 315 | IPR027443 | - | |
| Pdy4g00499 | 327 | Pfam | non-haem dioxygenase in morphine synthesis N-terminal | 29 | 122 | IPR026992 | - | |
| Pdy4g00499 | 327 | Pfam | 2OG-Fe(II) oxygenase superfamily | 169 | 273 | IPR044861 | - | |
| Pdy4g00499 | 327 | PANTHER | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED | 27 | 306 | IPR050231 | GO:0009416(PANTHER)|GO:0016706(PANTHER)|GO:0045487(PANTHER)|GO:0052634(PANTHER) | |
| Pdy4g00499 | 327 | SUPERFAMILY | Clavaminate synthase-like | 21 | 315 | - | - | |
| Pdy4g00499 | 327 | ProSiteProfiles | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 167 | 275 | IPR005123 | - | |
| Pdy4g00499 | 327 | FunFam | Gibberellin 2-beta-dioxygenase 1 | 11 | 314 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pdy4g00499 | K04125 | gibberellin 2beta-dioxygenase [EC:1.14.11.13] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pdy | Pdy-Chr4:9352144 | Pdy9g01840 | Pdy-Chr9:41696568 | dispersed | |
| Pdy | Pdy-Chr4:9352144 | Pdy7g02660 | Pdy-Chr7:73155475 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Pdy1g00382 | . | 56 | 362 | GA20OX gene family | AT4G25420 | 33.546 | 4.81e-44 | 153.0 | |
| Pdy1g00497 | . | 39 | 330 | GA20OX gene family | AT4G25420 | 33.003 | 1.11e-44 | 155.0 | |
| Pdy1g01248 | . | 59 | 352 | GA20OX gene family | AT4G25420 | 29.153 | 3.90e-42 | 149.0 | |
| Pdy1g01256 | . | 59 | 150 | GA20OX gene family | AT4G25420 | 29.348 | 1.26e-10 | 56.6 | |
| Pdy1g01257 | . | 232 | 362 | GA20OX gene family | AT1G44090 | 37.879 | 5.60e-22 | 88.2 | |
| Pdy1g02718 | . | 42 | 360 | GA20OX gene family | AT5G51810 | 30.061 | 8.47e-44 | 153.0 | |
| Pdy1g04244 | ACH | 27 | 375 | GA20OX gene family | AT4G25420 | 69.516 | 0.0 | 520.0 | |
| Pdy1g04399 | . | 40 | 356 | GA20OX gene family | AT4G25420 | 34.462 | 6.61e-55 | 183.0 | |
| Pdy1g04961 | . | 58 | 361 | GA20OX gene family | AT4G25420 | 34.194 | 1.29e-47 | 163.0 | |
| Pdy2g00215 | . | 63 | 369 | GA20OX gene family | AT4G25420 | 24.759 | 5.47e-17 | 79.0 | |
| Pdy2g00655 | . | 55 | 335 | GA20OX gene family | AT5G07200 | 25.352 | 4.15e-25 | 102.0 | |
| Pdy2g01051 | . | 7 | 373 | GA20OX gene family | AT4G25420 | 62.534 | 1.25e-162 | 459.0 | |
| Pdy2g01880 | . | 188 | 357 | GA20OX gene family | AT4G25420 | 38.824 | 1.82e-36 | 128.0 | |
| Pdy2g02742 | . | 37 | 350 | GA20OX gene family | AT4G25420 | 32.099 | 4.04e-54 | 181.0 | |
| Pdy3g02136 | . | 40 | 365 | GA20OX gene family | AT4G25420 | 30.117 | 3.66e-49 | 167.0 | |
| Pdy3g02137 | . | 40 | 343 | GA20OX gene family | AT4G25420 | 30.094 | 6.40e-46 | 159.0 | |
| Pdy3g02138 | . | 39 | 353 | GA20OX gene family | AT4G25420 | 31.212 | 3.58e-49 | 167.0 | |
| Pdy3g02423 | . | 40 | 330 | GA20OX gene family | AT4G25420 | 32.558 | 9.15e-47 | 161.0 | |
| Pdy3g02719 | . | 56 | 330 | GA20OX gene family | AT1G60980 | 29.73 | 4.49e-27 | 107.0 | |
| Pdy3g04276 | . | 42 | 328 | GA20OX gene family | AT5G51810 | 28.094 | 1.29e-22 | 95.5 | |
| Pdy3g04966 | . | 63 | 327 | GA20OX gene family | AT5G51810 | 30.797 | 3.47e-31 | 118.0 | |
| Pdy4g00037 | . | 34 | 373 | GA20OX gene family | AT1G60980 | 23.562 | 1.59e-18 | 84.3 | |
| Pdy4g00499 | . | 62 | 346 | GA20OX gene family | AT5G51810 | 30.743 | 1.91e-39 | 141.0 | |
| Pdy4g02428 | . | 50 | 363 | GA20OX gene family | AT5G51810 | 28.743 | 2.26e-25 | 103.0 | |
| Pdy4g02612 | . | 1 | 372 | GA20OX gene family | AT5G07200 | 30.319 | 4.31e-44 | 154.0 | |
| Pdy4g03480 | . | 40 | 368 | GA20OX gene family | AT4G25420 | 29.674 | 2.76e-43 | 151.0 | |
| Pdy4g03481 | . | 39 | 361 | GA20OX gene family | AT4G25420 | 31.118 | 7.56e-47 | 161.0 | |
| Pdy4g03482 | . | 39 | 369 | GA20OX gene family | AT4G25420 | 28.869 | 9.95e-44 | 152.0 | |
| Pdy4g03761 | . | 61 | 357 | GA20OX gene family | AT4G25420 | 26.846 | 1.47e-23 | 97.4 | |
| Pdy4g03844 | . | 25 | 376 | GA20OX gene family | AT5G51810 | 62.431 | 3.29e-164 | 463.0 | |
| Pdy4g03912 | . | 61 | 354 | GA20OX gene family | AT5G51810 | 33.333 | 1.51e-41 | 146.0 | |
| Pdy4g04186 | . | 63 | 346 | GA20OX gene family | AT5G51810 | 29.293 | 9.21e-33 | 123.0 | |
| Pdy4g04237 | . | 34 | 353 | GA20OX gene family | AT4G25420 | 30.982 | 7.27e-47 | 162.0 | |
| Pdy4g04482 | . | 57 | 357 | GA20OX gene family | AT4G25420 | 31.353 | 2.63e-39 | 141.0 | |
| Pdy5g00195 | . | 34 | 359 | GA20OX gene family | AT4G25420 | 33.234 | 3.64e-49 | 167.0 | |
| Pdy5g00789 | . | 81 | 328 | GA20OX gene family | AT4G25420 | 26.415 | 1.08e-25 | 104.0 | |
| Pdy5g02107 | . | 61 | 349 | GA20OX gene family | AT5G51810 | 30.667 | 4.84e-36 | 132.0 | |
| Pdy5g02355 | . | 42 | 364 | GA20OX gene family | AT5G51810 | 34.347 | 7.08e-52 | 174.0 | |
| Pdy5g02356 | . | 35 | 357 | GA20OX gene family | AT4G25420 | 30.925 | 3.86e-43 | 151.0 | |
| Pdy5g02359 | . | 39 | 352 | GA20OX gene family | AT4G25420 | 28.783 | 3.50e-40 | 143.0 | |
| Pdy5g02360 | . | 34 | 121 | GA20OX gene family | AT5G51810 | 32.584 | 2.29e-06 | 43.9 | |
| Pdy6g00485 | . | 38 | 351 | GA20OX gene family | AT4G25420 | 33.538 | 4.31e-58 | 190.0 | |
| Pdy6g00611 | ACH | 21 | 374 | GA20OX gene family | AT5G51810 | 67.59 | 0.0 | 517.0 | |
| Pdy6g00718 | . | 55 | 358 | GA20OX gene family | AT1G60980 | 32.381 | 2.61e-33 | 124.0 | |
| Pdy6g00791 | . | 35 | 351 | GA20OX gene family | AT1G60980 | 29.321 | 7.18e-37 | 135.0 | |
| Pdy6g00911 | . | 42 | 354 | GA20OX gene family | AT5G51810 | 32.288 | 1.36e-49 | 168.0 | |
| Pdy6g01817 | . | 32 | 356 | GA20OX gene family | AT4G25420 | 32.164 | 2.82e-51 | 172.0 | |
| Pdy6g01873 | . | 57 | 336 | GA20OX gene family | AT5G07200 | 36.655 | 1.77e-50 | 171.0 | |
| Pdy6g03317 | . | 61 | 368 | GA20OX gene family | AT1G44090 | 30.968 | 1.00e-34 | 128.0 | |
| Pdy6g03318 | . | 63 | 355 | GA20OX gene family | AT1G44090 | 30.169 | 1.04e-30 | 117.0 | |
| Pdy6g03599 | . | 61 | 368 | GA20OX gene family | AT4G25420 | 26.198 | 2.54e-19 | 85.5 | |
| Pdy6g03601 | ACH | 61 | 361 | GA20OX gene family | AT4G25420 | 25.987 | 3.48e-22 | 94.0 | |
| Pdy6g03602 | ACH | 55 | 335 | GA20OX gene family | AT5G07200 | 27.972 | 1.23e-25 | 103.0 | |
| Pdy7g00158 | . | 37 | 330 | GA20OX gene family | AT4G25420 | 31.757 | 2.22e-44 | 154.0 | |
| Pdy7g00341 | . | 53 | 372 | GA20OX gene family | AT5G07200 | 29.909 | 2.52e-40 | 143.0 | |
| Pdy7g00438 | . | 61 | 307 | GA20OX gene family | AT4G25420 | 22.8 | 7.37e-11 | 60.8 | |
| Pdy7g00472 | . | 67 | 369 | GA20OX gene family | AT4G25420 | 23.779 | 1.56e-13 | 68.6 | |
| Pdy7g01384 | . | 58 | 372 | GA20OX gene family | AT5G07200 | 31.661 | 6.12e-41 | 145.0 | |
| Pdy7g01587 | . | 61 | 352 | GA20OX gene family | AT4G25420 | 34.091 | 1.31e-53 | 179.0 | |
| Pdy7g01658 | . | 233 | 347 | GA20OX gene family | AT1G44090 | 36.134 | 5.28e-12 | 61.2 | |
| Pdy7g01659 | . | 63 | 347 | GA20OX gene family | AT1G44090 | 25.338 | 2.30e-15 | 74.3 | |
| Pdy7g02094 | . | 55 | 335 | GA20OX gene family | AT5G07200 | 28.772 | 9.91e-30 | 114.0 | |
| Pdy7g02096 | . | 55 | 335 | GA20OX gene family | AT5G07200 | 29.021 | 4.16e-26 | 104.0 | |
| Pdy7g02097 | ACH | 56 | 336 | GA20OX gene family | AT5G07200 | 25.175 | 4.36e-19 | 85.1 | |
| Pdy7g02099 | . | 57 | 364 | GA20OX gene family | AT1G60980 | 35.032 | 1.89e-50 | 171.0 | |
| Pdy7g02503 | . | 63 | 367 | GA20OX gene family | AT5G51810 | 30.255 | 1.99e-40 | 144.0 | |
| Pdy7g02504 | . | 59 | 269 | GA20OX gene family | AT5G51810 | 30.0 | 2.45e-25 | 101.0 | |
| Pdy7g02660 | . | 48 | 364 | GA20OX gene family | AT5G07200 | 31.751 | 1.35e-43 | 152.0 | |
| Pdy8g03389 | . | 83 | 356 | GA20OX gene family | AT4G25420 | 32.975 | 1.67e-35 | 130.0 | |
| Pdy9g01051 | . | 38 | 352 | GA20OX gene family | AT4G25420 | 32.515 | 4.24e-52 | 175.0 | |
| Pdy9g01840 | . | 63 | 346 | GA20OX gene family | AT5G51810 | 32.55 | 6.06e-42 | 148.0 | |
| Pdy9g01842 | . | 62 | 341 | GA20OX gene family | AT5G51810 | 30.526 | 4.40e-24 | 99.0 | |
| Pdy9g01968 | . | 35 | 330 | GA20OX gene family | AT5G07200 | 32.686 | 2.30e-46 | 160.0 | |
| Pdy9g02766 | . | 39 | 341 | GA20OX gene family | AT4G25420 | 33.333 | 8.66e-48 | 164.0 | |
| Pdy9g02768 | . | 42 | 174 | GA20OX gene family | AT5G51810 | 32.45 | 2.54e-11 | 59.7 |