AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00513 ATGTCTGGGAGGAATCGTGGACCTCCACTTCCAATGAAAGGTGTCCCACATGGTGGAATGGCTTCTATTCACGAACCTCCATTTGGAAGGAATCTTGGTCCAATGCCCCATCCTGCATTGCTTGAAGAGATGAGGGAAGCTCAGTTTGGGAGGGGCCACAGACCACTCCCGCCTCACCCTGCTATTTTTGAGGAGCGGCTCGCAGCTCAACATCAGGACATTCAGGGGCTATTGGTTGATAATCAGCGGTTAGCTGCAACCCATGTTGCGCTTAAGCAGGAATTAGAAGCTGCACAACACGAGCTTCAACAAACAGATCACTTTGCTCGCAACTTTCTCATGGAGAAGGATATGCAGATGAGAGAGTTGTATGAGAAGTCGGCTAAATTGGAACATGATCTTCATGGGGTGGAAGGCATGCGGGCCGAGCTTATGCAATTGCATGCTGATATTAAGGAATTGACAGCCACACGTCAAAAGCTCACTGCACAGGTTCAGGCTATGACCCAAGATCTCAACAGAGCCAATGCTGACTTGCAGCAAGTTCCAGCACTCAAGGCAGAAATTGGAGGGCTTAGACAGGAACTGCAACATGCGAGGGCTGCAATTGAACATGAGAAGAAGGGGCATGCCGAGAACTATGAGCATGGTCAAGTGATGGAGAAGAATTTACTATCTATGGCTCGAGAGTTGGAAAAGTTGCGTGCTGAGATGGCTAATGCTGAAAAAAGGGCTCGTGCTACTGCAGCAGTAGGGAATCCAAATCCAGGCTATAACACAAATTATGGCAATGTTGAAGCTAACTATGCCGGGAATCCTTACCCTGCAAACTATGGCATGGGTTCTACGAATCAAATGAATCCTGTGCAGGCTGGTGCAGAAGGTTATCCTCAGTATGGACCTGGACCTGGTACTTGGGGCTCATATGACATGCAACGGGCTCAAGGACACAGATAG 957 48.69 MSGRNRGPPLPMKGVPHGGMASIHEPPFGRNLGPMPHPALLEEMREAQFGRGHRPLPPHPAIFEERLAAQHQDIQGLLVDNQRLAATHVALKQELEAAQHELQQTDHFARNFLMEKDMQMRELYEKSAKLEHDLHGVEGMRAELMQLHADIKELTATRQKLTAQVQAMTQDLNRANADLQQVPALKAEIGGLRQELQHARAAIEHEKKGHAENYEHGQVMEKNLLSMARELEKLRAEMANAEKRARATAAVGNPNPGYNTNYGNVEANYAGNPYPANYGMGSTNQMNPVQAGAEGYPQYGPGPGTWGSYDMQRAQGHR 318
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00513 318 Coils Coil 81 101 - -
Pdy4g00513 318 MobiDBLite consensus disorder prediction 1 34 - -
Pdy4g00513 318 Coils Coil 217 251 - -
Pdy4g00513 318 Coils Coil 137 178 - -
Pdy4g00513 318 PANTHER PROTEIN FLX-LIKE 2 1 293 IPR040353 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00513 K27811 protein FLX/FLXL
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr1:79664857 Pdy4g00513 Pdy-Chr4:9618888 dispersed
Pdy Pdy-Chr4:9618888 Pdy7g02028 Pdy-Chr7:64782011 dispersed
Pdy Pdy-Chr4:9618888 Pdy5g02618 Pdy-Chr5:76317298 transposed