AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pdy4g00523 | ATGAAGATTCAGTGTAACGTATGTGAGACTGCGGCTGCTATTGTACTTTGTTGCGCCGACGAGGCGGCGCTATGCCGGACTTGTGATGAGCAGGTGCACGCCGCCAATAAGCTCGCCAGTAAGCATCAGAGGGTCCTTCTTTCTAATTCTAACTCGAAGATGCCTAATTGTGATATCTGTCAGGAATCAGTTGGCTTCTTCTTTTGTATGGAGGATAGGGCTTTGCTATGCAGAAAATGCGATGTTGCCATACACACAGTCAACACTTGTGTTTCATCACATCAGCGGTTTCTGCTTACGGGAGTGAAAGTAGGGTGTGAAGCTGCTGGCCTTGGTGCATCATCATCTCCTGGGAAGTTACATTCTACCAAAAACAGTGTTCCTTTGATTTCAACTGATCAATACAGCAAACCTGCCCCAGTGCAAGCTGCCGATTCCGCTCCTAGTCTGTCTTTCACAAGGAGCTCATCAGTCGATGATTTTCAACAATGGCAGCTTGACAAATTTCTTGGGTTTACTGATGTCAACCAGAATTGCAACTATATTAACAGTGTCTCACCCAAGGCTGAAAGCGGGAAGCTGGGAGACTCAGACTATTCCTCGATTCTAAGAGCCATGGAGGTCGAGTTAGACGAATTGTTAGGACAGGTACCTGTTGCCTCTTTGGTGATCCCACAAATAAGCTCCCCACCAATCACTACAGAAGTCTACTGGCCCAAAAGTCATGACCATCAGCAGTTGGACTCAGATGTATTTGATCCTGATATATGCGTACCAGATCTATATCGTTCCCAACAAAGTACAAGTGGTGTGAAACGGAGAAGGAACTTATAA | 834 | 45.92 | MKIQCNVCETAAAIVLCCADEAALCRTCDEQVHAANKLASKHQRVLLSNSNSKMPNCDICQESVGFFFCMEDRALLCRKCDVAIHTVNTCVSSHQRFLLTGVKVGCEAAGLGASSSPGKLHSTKNSVPLISTDQYSKPAPVQAADSAPSLSFTRSSSVDDFQQWQLDKFLGFTDVNQNCNYINSVSPKAESGKLGDSDYSSILRAMEVELDELLGQVPVASLVIPQISSPPITTEVYWPKSHDHQQLDSDVFDPDICVPDLYRSQQSTSGVKRRRNL | 277 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pdy4g00523 | 277 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
| Pdy4g00523 | 277 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Pdy4g00523 | 277 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
| Pdy4g00523 | 277 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Pdy4g00523 | 277 | CDD | Bbox1-BBX-like | 5 | 47 | IPR049808 | - | |
| Pdy4g00523 | 277 | CDD | Bbox1-BBX-like | 57 | 99 | IPR049808 | - | |
| Pdy4g00523 | 277 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270(InterPro) | |
| Pdy4g00523 | 277 | Gene3D | Classic Zinc Finger | 1 | 93 | - | - | |
| Pdy4g00523 | 277 | FunFam | B-box zinc finger protein 22 | 1 | 93 | - | - | |
| Pdy4g00523 | 277 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 246 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pdy4g00523 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 132670 | Pdy4g00523 | Pdy9g01856 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pdy | Pdy-Chr1:16522793 | Pdy4g00523 | Pdy-Chr4:9800974 | dispersed | |
| Pdy | Pdy-Chr1:90574024 | Pdy4g00523 | Pdy-Chr4:9800974 | dispersed | |
| Pdy | Pdy-Chr4:5656708 | Pdy4g00523 | Pdy-Chr4:9800974 | dispersed | |
| Pdy | Pdy-Chr4:9800974 | Pdy6g03099 | Pdy-Chr6:72871450 | dispersed | |
| Pdy | Pdy-Chr4:9800974 | Pdy9g01856 | Pdy-Chr9:41964999 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Pdy1g00882 | ACH | 251 | 329 | C2C2-CO-like Transcription Factor family | AT5G57660 | 34.118 | 7.68e-10 | 58.2 | |
| Pdy1g03673 | . | 1 | 183 | C2C2-CO-like Transcription Factor family | AT4G38960 | 61.321 | 5.89e-83 | 243.0 | |
| Pdy1g03724 | ACH | 4 | 103 | C2C2-CO-like Transcription Factor family | AT5G54470 | 49.524 | 1.05e-27 | 102.0 | |
| Pdy1g04153 | ACH | 259 | 331 | C2C2-CO-like Transcription Factor family | AT5G57660 | 41.096 | 3.06e-10 | 58.2 | |
| Pdy1g05584 | . | 140 | 267 | C2C2-CO-like Transcription Factor family | AT1G68190 | 29.861 | 4.22e-10 | 57.0 | |
| Pdy2g03119 | ACH | 99 | 319 | C2C2-CO-like Transcription Factor family | AT3G02380 | 26.829 | 4.48e-12 | 64.3 | |
| Pdy3g00983 | ACH | 1 | 331 | C2C2-CO-like Transcription Factor family | AT1G75540 | 42.566 | 1.13e-70 | 221.0 | |
| Pdy3g03046 | . | 289 | 400 | C2C2-CO-like Transcription Factor family | AT1G68520 | 43.478 | 7.72e-22 | 93.2 | |
| Pdy3g03122 | . | 12 | 401 | C2C2-CO-like Transcription Factor family | AT2G33500 | 39.03 | 5.22e-78 | 245.0 | |
| Pdy3g03780 | ACH | 4 | 127 | C2C2-CO-like Transcription Factor family | AT5G54470 | 49.6 | 3.81e-31 | 112.0 | |
| Pdy4g00272 | ACH | 1 | 196 | C2C2-CO-like Transcription Factor family | AT1G75540 | 52.551 | 3.91e-61 | 191.0 | |
| Pdy4g00439 | ACH | 1 | 372 | C2C2-CO-like Transcription Factor family | AT3G07650 | 52.745 | 1.18e-138 | 399.0 | |
| Pdy4g00523 | ACH | 1 | 296 | C2C2-CO-like Transcription Factor family | AT1G78600 | 45.603 | 3.89e-71 | 219.0 | |
| Pdy4g02754 | ACH | 14 | 355 | C2C2-CO-like Transcription Factor family | AT5G57660 | 46.174 | 1.33e-84 | 259.0 | |
| Pdy4g02994 | . | 289 | 399 | C2C2-CO-like Transcription Factor family | AT1G68520 | 30.357 | 1.19e-08 | 54.7 | |
| Pdy5g02175 | . | 7 | 328 | C2C2-CO-like Transcription Factor family | AT2G47890 | 46.448 | 6.20e-97 | 290.0 | |
| Pdy5g03047 | . | 185 | 270 | C2C2-CO-like Transcription Factor family | AT2G24790 | 38.372 | 2.59e-12 | 63.5 | |
| Pdy6g00785 | ACH | 285 | 326 | C2C2-CO-like Transcription Factor family | AT5G57660 | 54.762 | 3.31e-09 | 54.3 | |
| Pdy6g02286 | ACH | 55 | 346 | C2C2-CO-like Transcription Factor family | AT3G02380 | 47.17 | 1.79e-75 | 233.0 | |
| Pdy6g03099 | ACH | 1 | 319 | C2C2-CO-like Transcription Factor family | AT1G75540 | 46.154 | 4.82e-79 | 242.0 | |
| Pdy7g01695 | ACH | 1 | 372 | C2C2-CO-like Transcription Factor family | AT3G07650 | 53.439 | 4.89e-134 | 385.0 | |
| Pdy7g01738 | ACH | 8 | 355 | C2C2-CO-like Transcription Factor family | AT5G57660 | 45.0 | 1.90e-96 | 290.0 | |
| Pdy7g02653 | ACH | 1 | 224 | C2C2-CO-like Transcription Factor family | AT1G75540 | 50.885 | 5.25e-67 | 210.0 | |
| Pdy8g01139 | ACH | 270 | 388 | C2C2-CO-like Transcription Factor family | AT5G24930 | 35.484 | 7.25e-12 | 64.7 | |
| Pdy8g02194 | ACH | 9 | 347 | C2C2-CO-like Transcription Factor family | AT3G02380 | 49.608 | 9.25e-115 | 337.0 | |
| Pdy8g03443 | ACH | 276 | 331 | C2C2-CO-like Transcription Factor family | AT5G57660 | 48.214 | 2.78e-10 | 58.5 | |
| Pdy9g01821 | ACH | 1 | 373 | C2C2-CO-like Transcription Factor family | AT5G48250 | 54.408 | 6.32e-129 | 373.0 | |
| Pdy9g01856 | ACH | 1 | 299 | C2C2-CO-like Transcription Factor family | AT1G78600 | 51.757 | 2.31e-90 | 269.0 | |
| Pdy9g01995 | . | 3 | 91 | C2C2-CO-like Transcription Factor family | AT5G54470 | 59.551 | 1.33e-33 | 117.0 | |
| Pdy9g02310 | . | 45 | 406 | C2C2-CO-like Transcription Factor family | AT5G24930 | 52.551 | 7.19e-102 | 305.0 | |
| Pdy9g02710 | ACH | 220 | 346 | C2C2-CO-like Transcription Factor family | AT5G15850 | 37.209 | 2.97e-14 | 70.9 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Pdy | zf-B_box | 1.2e-05 | No_clan | TR | Others |