Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pdy4g00524	ATGTCATTACAACCACCTTTGCTAGAAACCATCCTTGTAGCTTCCATTGATGGCCCGATCACCGCCTACGATCTATTCACCGGAGCCGTCTTAGCACGCTTCAATGGCAGTCGATGCCCTCGTAATGGCATCGCCCTCCTCAGAAACAACTTAATTGCTGTATCTCATGTTTCGTCAGAGACTGGAGTAGGCTTTGTTCACTTGTATAATTCATGGTCTCCCTCTTGCATGCAGAATATACATGTCCCTGAACCCGTAGCTGCATTGGCTGCTAGCATAGATGGAACATACCTATTTTCCAGTGGTATTTCCGGCCAGATTCATTCATTAATGATACCTTCAGGGAACCTAATCCGGTCATTTTCTGCTCATGAAAAACCAGTATCTTGTCTTGAGTTAAACAGTGACGGATCGTTGATTCTCTCGGGGAGTGAGGATGGAACAATTGCTGTTATTCCTATGCTCACGCTTCTTGATTCTTGTTTTGATAAAGAATCGAGCCTTTCTAAGTTCAGTAAGTTCACCGGGCATGGAGCAGAAGTGACGGGGTTGACCACCGGGATGGTGAAGTGCAATGGGATTATGATCTCCAGCTCCTTGGATTGGACTTGCAAGGTGTGGAGTCTTATGAACATGAGCCACCTCCAGACGCTGAGATTCCCGGAAGGGATATGGTGCACGGTGGTTGGTGCATCAGAGAAGGAGTTGTATGCTGGTGGAACAGATGGAATGATATACAGAAGAAGGCTTAAAGTAGGGAGGAGAAAGCACGTTGCACAAGGAAGAGAAACGGTGGTCTGGGGTGGGACACATGGTGGAGCCGTGGTGGACATGAAGATGCTAAATTACGGGAAAACGCTTTTGACAGCATCTGAAGATGGATGGATTTGTGCATGGGAAGTAGATGATGGTAAGATGATAACCTGTTTTAGTGCAGAGACCGGTGGTGTTAGCAGAGTTGTAGTGGTGAAAGGCTGTGGTGGGTTCGGAACAAGAGAGATTTTAAAAGATGAATCTGGTAGTTATGGCAGCGGGAAGGAGGCAGGTATGGCGGTGAAGGAGGTGGCGGAAATGGAAGAGACTTTGAAGGCCGTGGCGGAAGAGCGTGGAAGGGCGATTACTAACCTTGAATCAGCAATTGCAATAAATGAAAGACTTCTTAACCTCATGCTCAAGGAAGCCAATGCAATTGCCAAAATTGAGGACTCCAAACTCAACAATAATTATAATAAGCTCGAGTCAAATGGATATTAA	1254	46.17	MSLQPPLLETILVASIDGPITAYDLFTGAVLARFNGSRCPRNGIALLRNNLIAVSHVSSETGVGFVHLYNSWSPSCMQNIHVPEPVAALAASIDGTYLFSSGISGQIHSLMIPSGNLIRSFSAHEKPVSCLELNSDGSLILSGSEDGTIAVIPMLTLLDSCFDKESSLSKFSKFTGHGAEVTGLTTGMVKCNGIMISSSLDWTCKVWSLMNMSHLQTLRFPEGIWCTVVGASEKELYAGGTDGMIYRRRLKVGRRKHVAQGRETVVWGGTHGGAVVDMKMLNYGKTLLTASEDGWICAWEVDDGKMITCFSAETGGVSRVVVVKGCGGFGTREILKDESGSYGSGKEAGMAVKEVAEMEETLKAVAEERGRAITNLESAIAINERLLNLMLKEANAIAKIEDSKLNNNYNKLESNGY	417

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pdy4g00524	417	ProSitePatterns	Trp-Asp (WD) repeats signature.	287	301	IPR019775	-
	Pdy4g00524	417	PANTHER	WD-REPEAT PROTEIN 18	9	328	IPR045227	GO:0005656(PANTHER)\|GO:0006261(PANTHER)\|GO:0006364(PANTHER)\|GO:0097344(PANTHER)
	Pdy4g00524	417	SUPERFAMILY	Quinoprotein alcohol dehydrogenase-like	10	320	IPR011047	-
	Pdy4g00524	417	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	121	151	-	-
	Pdy4g00524	417	Gene3D	-	264	329	IPR015943	GO:0005515(InterPro)
	Pdy4g00524	417	Pfam	WD domain, G-beta repeat	172	208	IPR001680	GO:0005515(InterPro)
	Pdy4g00524	417	Pfam	WD domain, G-beta repeat	115	150	IPR001680	GO:0005515(InterPro)
	Pdy4g00524	417	ProSiteProfiles	Trp-Asp (WD) repeats profile.	121	151	IPR001680	GO:0005515(InterPro)
	Pdy4g00524	417	SMART	WD40-4	211	249	IPR001680	GO:0005515(InterPro)
	Pdy4g00524	417	SMART	WD40-4	73	111	IPR001680	GO:0005515(InterPro)
	Pdy4g00524	417	SMART	WD40-4	114	153	IPR001680	GO:0005515(InterPro)
	Pdy4g00524	417	SMART	WD40-4	167	208	IPR001680	GO:0005515(InterPro)
	Pdy4g00524	417	SMART	WD40-4	260	300	IPR001680	GO:0005515(InterPro)
	Pdy4g00524	417	Gene3D	-	6	165	IPR015943	GO:0005515(InterPro)
	Pdy4g00524	417	Gene3D	-	166	263	IPR015943	GO:0005515(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pdy4g00524	K14829	pre-rRNA-processing protein IPI3

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Pdy	Pdy-Chr4:9804601	Pdy6g03377	Pdy-Chr6:76248825	dispersed