AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00534 ATGATGATACCCAAAATAGGTTGCTTCGGATTGTCGTTAAATAAACACAAAAGTACGACGAAGAAGTTAAGGAAGCCGAAACCATGGACGTTCCCGAGACCAGTTACATGGAATCAGCTGGTGCAGATGCGTGATGAGTTTTGGGATACAGCACCTCACCATGGTGGGAAGAAAGAAATCTGGGACGCGTTACATGCAGCAGCTGAGGCTGATATAGAGCTTGCCCAAGCAATTGTGGACAGTGCAGGGGTTATTGTTCATAAACCTGATATGACAGTTTGTTATGATGAAAGAGGTACTAAATATGAAATACCAAGGTATGTGTTGAGTGAGCCAACAAACTTGATACGACTAAGTTGA 360 43.06 MMIPKIGCFGLSLNKHKSTTKKLRKPKPWTFPRPVTWNQLVQMRDEFWDTAPHHGGKKEIWDALHAAAEADIELAQAIVDSAGVIVHKPDMTVCYDERGTKYEIPRYVLSEPTNLIRLS 119
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00534 119 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 16 116 IPR039869 -
Pdy4g00534 119 Pfam Ubiquitin-binding domain 20 117 IPR032752 -
Pdy4g00534 119 Gene3D - 36 109 IPR038169 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00534 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:10044228 Pdy4g04263 Pdy-Chr4:94126929 dispersed
Pdy Pdy-Chr2:25135911 Pdy4g00534 Pdy-Chr4:10044228 wgd