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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00580 ATGGCACAATTGCCGCCAAAAGTGCCAACAATGGCGAATAACTGGCCATCCTTTCCCTACCAGATGATGTCGATGCCGTCTTCCGCAGCGCAGCCTCCCAATTGGGTGGACGAGTTCCTGGATTTCTCTTCGGTCAGGAGGACCGCTCATCGAAGATCGGTCAGCGATCCGATTGCCTTCATTGAATCGCCCTTCATTGACGAATGCCGCGGCAATTCCAATGCCAATAATTCTTCCATGATGCCTTCTAACACCAGTACTGGATTTGAACGTTTAGATGACGAGCAGTTTAGCTCCATGTTTTCCGACGATGTCACGACGAATCTCCCGTCGACGAGATCCTCCTCGAATCCTTCCACGCCTTCAGATCAAAACAGTGACAATGACGTAGACGCTAAACCAACACCACCACCGCCACCACCGCCAGAGCAACACCACCAGCTGAAGAACGAACCTGAAGAGGTGGAAGACGGTGGCAGATGCCAACCTGAGACAGAATCATCAGCTAAACCTTGCTTTAATTTCTCTAGCGACGGTGGCGCCACCATTGTTGATCCAAAAAGAGTTAAAAGGATTTTAGCAAATCGTCAATCTGCTCAGAGATCACGTGTGAGAAAGTTGCAGTACATTTCTGAACTCGAACGCAGTGTTACTTCGTTACAGACGGAGGTCTCGGCATTATCACCACGGGTGGCGTTTCTGGATCATCAGAGGTTGGTTTTAAACGTGGATAACAGCGCGCTCAAGCAACGGATAGCTGCTTTAGCTCAAGATAAGATCTTCAAAGACGCTCATCAAGAAGCGTTGAAGAAGGAGATAGAGAGGTTAAGGAAAGTGTATCACGAACAGAATATGCAGAAGACGGGAAACAACGACGACGACGACGAGGAGAACGCGACGGCTACCGGCGGAAACGACGGTGGCTCCGCCGTGTAG 936 50.0 MAQLPPKVPTMANNWPSFPYQMMSMPSSAAQPPNWVDEFLDFSSVRRTAHRRSVSDPIAFIESPFIDECRGNSNANNSSMMPSNTSTGFERLDDEQFSSMFSDDVTTNLPSTRSSSNPSTPSDQNSDNDVDAKPTPPPPPPPEQHHQLKNEPEEVEDGGRCQPETESSAKPCFNFSSDGGATIVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRLVLNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRKVYHEQNMQKTGNNDDDDEENATATGGNDGGSAV 311
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00580 311 MobiDBLite consensus disorder prediction 280 311 - -
Pdy4g00580 311 PANTHER BASIC LEUCINE ZIPPER 34 1 296 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Pdy4g00580 311 MobiDBLite consensus disorder prediction 280 294 - -
Pdy4g00580 311 Gene3D - 186 258 - -
Pdy4g00580 311 Coils Coil 266 286 - -
Pdy4g00580 311 SUPERFAMILY Leucine zipper domain 187 241 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Pdy4g00580 311 CDD bZIP-plant-RF2 188 238 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Pdy4g00580 311 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 190 205 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Pdy4g00580 311 SMART brlzneu 183 247 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Pdy4g00580 311 MobiDBLite consensus disorder prediction 146 163 - -
Pdy4g00580 311 MobiDBLite consensus disorder prediction 102 131 - -
Pdy4g00580 311 Pfam bZIP transcription factor 187 231 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Pdy4g00580 311 MobiDBLite consensus disorder prediction 102 180 - -
Pdy4g00580 311 FunFam Basic leucine zipper 61 186 259 - -
Pdy4g00580 311 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 248 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00580 K20557 transcription factor VIP1
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Event-related genes

Select Gene_1 Gene_2 Event_name
132694 Pdy4g00580 Pdy9g01919
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:10804877 Pdy8g01048 Pdy-Chr8:40491133 dispersed
Pdy Pdy-Chr1:93660466 Pdy4g00580 Pdy-Chr4:10804877 wgd
Pdy Pdy-Chr4:10804877 Pdy9g01919 Pdy-Chr9:42663876 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pdy1g00486 . 21 143 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 36.22 6.08e-18 73.2
Pdy1g00967 . 55 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 60.616 3.97e-111 329.0
Pdy1g01035 . 114 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 27.236 1.36e-19 84.7
Pdy1g02445 ACH 19 144 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 51.969 2.02e-45 143.0
Pdy1g03353 . 29 720 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40950 49.598 1.57e-174 514.0
Pdy1g03402 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 63.393 2.01e-143 407.0
Pdy1g03455 . 6 295 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 54.276 1.08e-88 265.0
Pdy1g03568 ACH 1 228 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 65.254 1.02e-107 311.0
Pdy1g03657 . 1 517 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 58.813 0.0 548.0
Pdy1g03870 . 1 307 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 50.755 1.28e-90 271.0
Pdy2g00540 . 53 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 62.393 5.98e-42 138.0
Pdy2g00760 . 146 214 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G22850 42.029 4.92e-11 53.9
Pdy2g00805 . 40 189 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G51960 38.158 2.91e-22 86.7
Pdy2g00948 ACH 1 382 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 43.961 4.86e-83 256.0
Pdy2g03372 . 1 153 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 73.203 1.10e-61 186.0
Pdy2g03795 . 1 481 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 61.85 0.0 590.0
Pdy2g03855 . 61 550 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 47.601 1.26e-122 366.0
Pdy3g00238 ACH 15 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 49.401 5.68e-87 263.0
Pdy3g02527 ACH 1 310 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 55.143 3.98e-112 328.0
Pdy3g02666 ACH 5 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 34.615 1.22e-17 73.2
Pdy3g02824 . 3 172 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 53.179 2.31e-48 153.0
Pdy3g03148 . 12 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 48.171 1.73e-36 123.0
Pdy3g03150 . 22 158 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 48.551 3.50e-36 121.0
Pdy3g03274 . 4 452 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G68640 59.958 6.43e-167 476.0
Pdy3g03666 ACH 1 248 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 54.074 1.24e-87 259.0
Pdy3g04495 ACH 1 376 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 62.435 6.12e-150 429.0
Pdy4g00093 ACH 1 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 48.292 3.60e-101 304.0
Pdy4g00251 ACH 24 159 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34590 48.227 1.76e-38 127.0
Pdy4g00544 ACH 112 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 25.0 1.59e-16 75.5
Pdy4g00580 ACH 1 311 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 55.255 4.06e-101 298.0
Pdy4g01241 . 120 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G44080 45.933 1.41e-40 140.0
Pdy4g01350 ACH 211 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 53.333 5.31e-23 96.3
Pdy4g03178 . 12 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 53.191 1.89e-99 293.0
Pdy4g03661 ACH 12 143 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 58.333 8.81e-53 162.0
Pdy4g03974 ACH 1 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 49.639 8.20e-109 323.0
Pdy4g04277 . 148 318 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 24.859 4.81e-13 65.1
Pdy5g00709 ACH 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 52.494 1.72e-111 332.0
Pdy5g00916 ACH 9 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 47.619 1.65e-38 127.0
Pdy5g02754 . 16 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 52.548 5.31e-92 274.0
Pdy5g02892 . 23 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 57.303 3.51e-168 480.0
Pdy5g03075 . 1 440 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G36270 47.903 1.46e-106 321.0
Pdy5g03236 ACH 15 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 46.951 2.15e-72 225.0
Pdy6g00013 . 7 315 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G44080 45.238 2.52e-60 193.0
Pdy6g00208 . 217 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 53.623 2.08e-13 63.9
Pdy6g00272 ACH 215 305 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 40.659 1.81e-12 65.1
Pdy6g00820 ACH 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 53.924 2.21e-116 339.0
Pdy6g01774 . 1 265 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 41.333 3.17e-67 216.0
Pdy6g01889 . 62 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 41.991 7.21e-38 132.0
Pdy6g02279 . 20 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 55.625 1.29e-50 159.0
Pdy6g02520 . 44 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 42.623 5.26e-22 85.9
Pdy6g02669 ACH 1 310 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 55.072 2.65e-110 324.0
Pdy6g02920 ACH 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 51.551 4.91e-112 333.0
Pdy6g03120 ACH 9 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 49.686 6.58e-45 143.0
Pdy7g00129 . 1 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G31370 63.343 2.50e-130 375.0
Pdy7g00175 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 74.924 3.58e-176 489.0
Pdy7g00261 . 121 318 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 27.311 4.39e-16 75.1
Pdy7g01244 ACH 42 273 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G42380 34.8 2.64e-22 93.6
Pdy7g01647 ACH 9 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 47.929 6.79e-45 144.0
Pdy8g00024 . 155 294 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G42990 40.667 1.52e-15 73.2
Pdy8g00226 . 63 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 35.111 1.56e-18 78.6
Pdy8g00697 . 30 469 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G19490 34.698 1.00e-39 146.0
Pdy8g00934 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.831 5.53e-179 496.0
Pdy8g01048 . 21 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 67.941 9.38e-154 439.0
Pdy8g02052 ACH 5 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 38.69 5.14e-27 98.2
Pdy8g02796 ACH 213 294 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 45.122 2.49e-15 73.6
Pdy8g03236 ACH 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 54.948 3.68e-113 331.0
Pdy9g01387 ACH 187 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 48.246 2.35e-23 97.8
Pdy9g01636 ACH 1 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 39.806 8.73e-64 206.0
Pdy9g01709 ACH 15 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 53.205 7.68e-48 151.0
Pdy9g01893 . 114 316 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 25.877 5.55e-17 77.0
Pdy9g01895 ACH 114 316 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 26.695 1.43e-16 76.6
Pdy9g01919 ACH 1 317 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 48.529 9.63e-87 261.0
Pdy9g02393 . 34 276 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 47.082 5.22e-58 187.0
Pdy9g02442 ACH 1 388 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 61.809 1.56e-152 435.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Pdy bZIP_1 1.2e-09 CL0018 TF bZIP