AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00620 ATGAGAGGAGTGATTGGGAAGCACCCATCAAGTGATGGAAATGGTGAAGTTGGTGGTGCAAATGGGATCATAAAATACAACAGAAAATGCAGAGATGTTGTGTTTCTTGTTTTCTTCATTGCTTTCTGGATCGCCATGATAGTTAACTCTAGCTTCGGCTTCAACCAAGGAAACCCTTTGAGGCTAAACTTCGGGTTGGATTATAAAGGAAATGTATGTGGGGGCAAACACAAAGATTTTGACCTGCGTGAATTAGAACTCAAATACTGGGTAAATCCTAACCAAGTTTACCAAAGTGGATTAAAGAACAGTGGAGTAAAACTGTCAAATGCTCGTGCAGTATGCTTGTTGGATTGTCCAATACCATCAGAAGATTCTCTGAATTGGGTTTGTGATTATCCAGAAGGAGATATCCGTATTTCATTAGATGATTGGATTGATATGAATTATGATTATTTTGCTGACCTTACTCCTGAACTAAGAAACACTTCCCTTCAACTTCAAGGTCCTTGCTACCCTGTCATTTTTCCAAGTGTAAACGTTTATTGGAGTTGCCAATTTATTGATCGACCATCGAATGTATCTTTAACTAATTGGAAGAGAATGAATGGAATTACCATTAATGATGATATGGTCATTGATAAATCTATTCACAAGTCCATTAACGCCCGGTCTTCTGTATTAAAGAGATATGTGGCTGATGTTGGAAAATCATGGCCTGTGTTAATTGTGTGTGGAGGACTCTTGCCTCTATTTCTATCATTGCTATGGCTGTTGATGATTCGGCATTTTGTAGCTGCAATGCCATGGGTTACCGTATTTTTCTTTAATGGCCTCATAATATCAGTCACAATGTTCTATTACATGAAAGCTGGATGGATTGGAGACGATGCTATCTCACCGATCATTGGTGAACATGATCCATATTATCATGTTTCTGCCCGGGAGCAACATCATATCCGTGCAGCTGCTTTTCTCATGACTTGTGTTATGATTGTTGCTGTTTTATCATCTATAGCCATTGTTAGACGGATTCTTATGGCAACATCAGTACTCAAGGTTGCTGCAAAAGTCATTGGGGAAGTTCATGCTCTCATAATATTCCCGGTTGTACCATATTTAGTCCTTGCAGTTTTCTACATGTTTTGGTTATCGGCTGCTCTCCATCTTTTCAGTTCTGGTCAAATCGTTCGCAACGATTGCAACACAAACTGTTGTGCATATGATCTTAAAGCCAAAAGGGTCAGTTGTGATGATTGCTGTGGTTATAGCATCCATTACACTCCTCATATAGCAGCTTCCATTCTATTCCACTTGTTTGGATGTTATTGGGCTACTCAGTTCATCATAGCATCTTCTTCAACTGTGATTGCTGGTTCTGTAGCTTCCTACTATTGGGCTCGTGGAGAATCTTCGACTACGATTCCGTTTCTTCCGGTTTTCTCTTCGATGAAGCTACTCATGCGTTATAGCCTTGGCTCGGTGGCAATCGGCTCCTTGATTGTATCTTTTGTTGAGTCAACTCGGTTCATACTCGAGGCAATAAGGCGGAGACTAAAAGTTGCTGATATTTTGCCTGAAAGCTGGATTAAGAGGATGATGTTCTATACTTCTCGGTTTTGCTTGAAGTGTATTGAATTGACCATAAAATCTGTGAACCGGAATGCATATATAATGATTGCTATAACAGGAAAAGGGTTTTTTAGAGCTTCTGAAATGGCAACGGATTTGATAATTACTAACATACTTCGTATAGGCAGAGTGAATGTGATCGGGGATGTTATTCTCTTTCTTGGGAAGCTGTGTGTGAGTCTTGCGAGTGCACTTTTCGCGTTCCTTATGTTGGACACTCATAAATACAAATCGTCCCACAACAAGATCACTTCCCCATTATTTCCTGTGCTGGTATGTTGGGGTCTTGGATATGTAGTGGCGACCCTCTTCTTTGCAGTGGTTGAAATGTCGATTGATACTATTATACTGTCATATTGCCAGGACGCCGAGGAGCATCAAGGGACTGCACATTATGCTCCACCACTTTTGATTGAAACATTTGATGATCTAAATGAGGTGCAAAGAATTGCACAATGA 2091 40.17 MRGVIGKHPSSDGNGEVGGANGIIKYNRKCRDVVFLVFFIAFWIAMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHKDFDLRELELKYWVNPNQVYQSGLKNSGVKLSNARAVCLLDCPIPSEDSLNWVCDYPEGDIRISLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWSCQFIDRPSNVSLTNWKRMNGITINDDMVIDKSIHKSINARSSVLKRYVADVGKSWPVLIVCGGLLPLFLSLLWLLMIRHFVAAMPWVTVFFFNGLIISVTMFYYMKAGWIGDDAISPIIGEHDPYYHVSAREQHHIRAAAFLMTCVMIVAVLSSIAIVRRILMATSVLKVAAKVIGEVHALIIFPVVPYLVLAVFYMFWLSAALHLFSSGQIVRNDCNTNCCAYDLKAKRVSCDDCCGYSIHYTPHIAASILFHLFGCYWATQFIIASSSTVIAGSVASYYWARGESSTTIPFLPVFSSMKLLMRYSLGSVAIGSLIVSFVESTRFILEAIRRRLKVADILPESWIKRMMFYTSRFCLKCIELTIKSVNRNAYIMIAITGKGFFRASEMATDLIITNILRIGRVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLFPVLVCWGLGYVVATLFFAVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDDLNEVQRIAQ 696
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00620 696 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 22 684 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Pdy4g00620 696 Pfam Plasma-membrane choline transporter 326 668 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00620 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:11354186 Pdy4g04373 Pdy-Chr4:95698711 dispersed