AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pdy4g00624 | ATGGGGGATCGTTTAAGGTCGGCTACGCTTGATGACTTGCCATTGCATTTGATTCTTGAAATACTAACATCTGGGGGTCGATTAAGTGGTGTGGATCTTGTGTGTTTGGAGCTAACTAACACAGTTTTTGGAGGAACCCATGTGTTGGTTCCTCAAAAGTCAAAATCTTTAGTTGACTTTGCAGCTGTTCAACTTTGTGGGTCACATCCTATATATGTTGGCTTGAGCCACAGAGCTCAAGAAGAGCTAGTGGCTCGATGTGGTGGAAATTGGAAGAGGGTTCTGAGGTTCTTGCAGTCAGTTCACCAGTCTTCAGATGTGGTTGAAACCTCTACAGGCAATAAGATGCAAATTAGGAGTGGAAGATATCACACATTACTGATTAAAGATTCAACCCTTTACTCTTGTGGTTCAAGTTTGTGTGGTGTTCTTGGTCATGGCCCTGAAACAACACAATGTGTAGCATTCACACCGATTAAATTCCCGTATCCTGCCCATGTCACACATGTTTCAGCCTCACATAATCATGCTGCCTTTGTCACACAGCAAGGAGAGGTTTTCACATGTGGTGATAATTCGTCTTTCTGTTGTGGCCATAGCGACACAAATCGTCCAATTTTCAAGCCTCGCCTTGTTGAAACATTAAAGGAAGTCCCTTGTGTTCAGGTTGCTACTGGGGTTAGCTTTACTGTTTTTCTTACAAAAGAAGGTCAAGTATACACTTGTGGGACCAATGCACACGGTCAACTTGGCCATGGTGACACCTTGGATAGACCAACACCGAAACTTGTGGAACAGCTTGTGACTGTTGGTCCTGTTGTACAAATTGCAGCTGGTCCAAGTTATGCACTTGCTGTGACTAATGATGGAACCGTTTACTCATTTGGGTCTGGAACCAATTTCTGTCTTGGCCATGGTGAGCAGCACAATGAACTCCGCCCTCGTCCACTCATGTGGTTCAGGAGAAAAGGTGTACACGTGGTTCGTGTTTCTGCTGGTGATGAACATGTGGTTGCACTCGATTCCAATGGATACGTTTATACATGGGGCAAAGGCTACTGTGGTGCACTTGGCCATGGTGATGAGATTGATAAAACAACCCCCGAGTTCCTTGTTAGCCTCAAAGCTCACCTCGCTGTTCAGGTGTGTGCAAGCAAAAGGAAGACATTTGTGTTAGTGGATAATGGATGTTTATATGGATTTGGATGGATGGGATTTGGGAGTCTAGGGTTTCCAGACAGAGGAGTATCTGATAAAGTGTTGAAGCCTAGCATGCTTCACAGTCTAAAAGATCATCATATTTCTCAAGTAAGCACAGGTTTGTATCACTCGGTTGTAGTCACGAATCGAGGTCATATTTTCGGGTTTGGAGACAACGAGCGGGCACAACTAGGACACGATAAGTTGAGAGATTGTCTCCACCCAACTGAAATCTTGTTTGAGGAAGCAAGTGAAGTTGGTGTATGCTAA | 1470 | 44.42 | MGDRLRSATLDDLPLHLILEILTSGGRLSGVDLVCLELTNTVFGGTHVLVPQKSKSLVDFAAVQLCGSHPIYVGLSHRAQEELVARCGGNWKRVLRFLQSVHQSSDVVETSTGNKMQIRSGRYHTLLIKDSTLYSCGSSLCGVLGHGPETTQCVAFTPIKFPYPAHVTHVSASHNHAAFVTQQGEVFTCGDNSSFCCGHSDTNRPIFKPRLVETLKEVPCVQVATGVSFTVFLTKEGQVYTCGTNAHGQLGHGDTLDRPTPKLVEQLVTVGPVVQIAAGPSYALAVTNDGTVYSFGSGTNFCLGHGEQHNELRPRPLMWFRRKGVHVVRVSAGDEHVVALDSNGYVYTWGKGYCGALGHGDEIDKTTPEFLVSLKAHLAVQVCASKRKTFVLVDNGCLYGFGWMGFGSLGFPDRGVSDKVLKPSMLHSLKDHHISQVSTGLYHSVVVTNRGHIFGFGDNERAQLGHDKLRDCLHPTEILFEEASEVGVC | 489 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pdy4g00624 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 290 | 343 | IPR000408 | - | |
| Pdy4g00624 | 489 | SUPERFAMILY | RCC1-BLIP-II | 380 | 479 | IPR009091 | - | |
| Pdy4g00624 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 131 | 183 | IPR000408 | - | |
| Pdy4g00624 | 489 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 437 | 447 | IPR000408 | - | |
| Pdy4g00624 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 237 | 289 | IPR000408 | - | |
| Pdy4g00624 | 489 | Gene3D | - | 270 | 487 | IPR009091 | - | |
| Pdy4g00624 | 489 | Gene3D | - | 84 | 269 | IPR009091 | - | |
| Pdy4g00624 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 327 | 340 | IPR000408 | - | |
| Pdy4g00624 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 453 | 467 | IPR000408 | - | |
| Pdy4g00624 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 437 | 453 | IPR000408 | - | |
| Pdy4g00624 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 346 | 362 | IPR000408 | - | |
| Pdy4g00624 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 291 | 307 | IPR000408 | - | |
| Pdy4g00624 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 344 | 395 | IPR000408 | - | |
| Pdy4g00624 | 489 | SUPERFAMILY | RCC1-BLIP-II | 114 | 414 | IPR009091 | - | |
| Pdy4g00624 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 183 | 233 | IPR000408 | - | |
| Pdy4g00624 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 343 | 392 | IPR000408 | - | |
| Pdy4g00624 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 289 | 340 | IPR000408 | - | |
| Pdy4g00624 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 132 | 180 | IPR000408 | - | |
| Pdy4g00624 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 236 | 286 | IPR000408 | - | |
| Pdy4g00624 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 184 | 236 | IPR000408 | - | |
| Pdy4g00624 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 396 | 450 | IPR000408 | - | |
| Pdy4g00624 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 434 | 463 | - | - | |
| Pdy4g00624 | 489 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 111 | 315 | IPR051210 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pdy4g00624 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pdy | Pdy-Chr2:7851498 | Pdy4g00624 | Pdy-Chr4:11421161 | dispersed | |
| Pdy | Pdy-Chr4:11421161 | Pdy5g00920 | Pdy-Chr5:17600901 | dispersed |