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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pdy4g00650	ATGAGGCTCATGATGGAGACCCCAGCACCAAGGAGGTTGTTGAGAAAGAAATCACTCTCTAGAAGCTATGATGAGAATCTGATGGATGATTATTTAGACAAACAGTTAGGTAGTTCTTCAAGGAAAAGGTTTAGAACAAAGGAAGAATTGGAGAAAGAAACAGAAAAAGAAGCCATGATAGCCCTTTCTTTAGGGTTTCCCATAGACGCACTGCTTGAAGAAGAAATCAAAGCTAATGTAGTGAGTAAATTAGATGGAAAAGAGCAGAATGACTATATTGTGGTGAGAAACCATATACTTTCAAGATGGAGAGCTAATGTACAGGCATGGCTTTCCAAAGGACATATAAGAGAAACTGTTAGTAATGAATATGATCAATTGCTTCATTCAGCTTATGACTTTCTTTTGCATAATGGGTATATCAATTTTGGAGTCTCACCACCATTCAAGGCTCAGATGCCTGAGGAAGCAACCGAGGGGTCTGTAATAATCATTGGTGCAGGCCTTGCTGGGCTAGCAGCAGCCCGCCAGCTATTAGCTTTTGGTTTTAAAGTGATTGTTCTAGAAGGTAGGAACAGACCAGGTGGAAGAGTTTATACTCAAAAAATGGGTCAAAAAGGGAATTATGCTGCGGTAGATCTTGGTGGTAGTGTTATCACAGGTATCCATGCAAATCCTCTTGGAGTTTTAGCTAGACAACTTGCAGTTCCTCTTCATAAGGTTAGAGATAAATGTCCATTGTATGATCCTGAAGGTCGACCCGTTGATGATGAAGTTGATTCCAAAATAGAATTTGTTTTCAATAGACTTCTTGACAAAGTTACTGAATTTAGACAACTTATGGGTAAATCAGCTGCTGATATTTCATTAGGCTCGGTTCTTGAGAGGCTTAGACAGTTGTATGCAGTGGCCACAAGTCTCGAGGAAAAACAGTTACTTGACTGGCACTTTGCAAACTTAGAATATGCAAACGCAGGTTCTCTTTCACATCTTTCTGCTGCATATTGGGATCAAGATGACCCGTACGAAATGGGTGGTGATCACTGCTTTCTTGCAGGCGGGAACTGGAGGTTAATTGATGCATTATGTGACGGGGTTCCCATTTTTTATGAAAAAACCGTCCAAATGGTTCAATATGGCAAGCAGGGTGTTGAAGTCACTGCTGGGAATCAAACGTTTCAAGCAGACATGGTGTTATGCACAGTTCCTCTTGGTGTTTTAAAGAAAAAGACCATAACTTTTGTACCAGATTTACCAGCAAGGAAACTTGAAGCAATTGAAAAATTGGGATTTGGGTTGTTGAATAAGGTTGCTATGGTATTCCCTTCTGTGTTTTGGGGGGAAGATCTTGATACATTCGGCTGCCTTGGCAAGAATAGCAACATAAGAGGGGAGTTCTTCTTGTTTTATAGTTATCATACGGTTTCAGGAGGTTCAGTACTTGTTGCATTGGTTGCTGGTGAAGCTGCAAATTCATTTGAGTCCACACATCCATCCACTTTGCTGCATCGTGTTTTAAGCATCCTTAGAGGTATATATGGTCCAAAGGGTATTGATGTACCTAATCCCATCCAATCTATATGCACAAAATGGGGAAATGATCCCTTTTCTTACGGTTCATACTCTCATGTAAGAGTACACTCTTCGGGTAGTGATTATGATATACTTGCAGAAAATGTGGAAAACCGACTTTTCTTTGCTGGTGAAGCCACAAACCGCCAACACCCTGCCACCATGCACGGTGCCTACTTAAGTGGTTTGAGAGAAGCTTCATGCATTTGTAGAGTCACACGGGATAGTAAACAAACTCAACCTAAAAAAAGCATTCGGAAAAGCATCCCAGTGAGTGATATACTTGTAAATCTGTTCAAGTATCCAGATTTAGCTTTTGGGAACTTCAGTTTTGTATTTGACCCGTCAACTGAAGACCCTAAGTCAACAGGGCTTATGATGGTCACCATTGATAGTTCAGTAGATTTGTGTAATGATGATGGGAGGGTCAACAATGGTCAACATTGTGATAAGCAACCTTTGAAGCTGTATATGACTATATCGCGTGTACAAGCACACGAGTTGCAATCAGTGGTAGGAGGTGGTGAAAGTCAGTTGACATATCTGTATAAAAATCTCGGGTTGAAGTTAATGGGTTTGGACCGTTTTACCCTCGTGGCCAATTCTTTGATTTCTTACATTGCAACACGAAGAGGGCGGGTCAGAAACAGAAGAGTTTCTGCAAATCGTGTTTCTTACACATGA	2256	40.82	MRLMMETPAPRRLLRKKSLSRSYDENLMDDYLDKQLGSSSRKRFRTKEELEKETEKEAMIALSLGFPIDALLEEEIKANVVSKLDGKEQNDYIVVRNHILSRWRANVQAWLSKGHIRETVSNEYDQLLHSAYDFLLHNGYINFGVSPPFKAQMPEEATEGSVIIIGAGLAGLAAARQLLAFGFKVIVLEGRNRPGGRVYTQKMGQKGNYAAVDLGGSVITGIHANPLGVLARQLAVPLHKVRDKCPLYDPEGRPVDDEVDSKIEFVFNRLLDKVTEFRQLMGKSAADISLGSVLERLRQLYAVATSLEEKQLLDWHFANLEYANAGSLSHLSAAYWDQDDPYEMGGDHCFLAGGNWRLIDALCDGVPIFYEKTVQMVQYGKQGVEVTAGNQTFQADMVLCTVPLGVLKKKTITFVPDLPARKLEAIEKLGFGLLNKVAMVFPSVFWGEDLDTFGCLGKNSNIRGEFFLFYSYHTVSGGSVLVALVAGEAANSFESTHPSTLLHRVLSILRGIYGPKGIDVPNPIQSICTKWGNDPFSYGSYSHVRVHSSGSDYDILAENVENRLFFAGEATNRQHPATMHGAYLSGLREASCICRVTRDSKQTQPKKSIRKSIPVSDILVNLFKYPDLAFGNFSFVFDPSTEDPKSTGLMMVTIDSSVDLCNDDGRVNNGQHCDKQPLKLYMTISRVQAHELQSVVGGGESQLTYLYKNLGLKLMGLDRFTLVANSLISYIATRRGRVRNRRVSANRVSYT	751

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pdy4g00650	751	Gene3D	-	244	549	-	-
	Pdy4g00650	751	Gene3D	-	162	591	IPR036188	-
	Pdy4g00650	751	FunFam	Lysine-specific histone demethylase 1A	56	156	-	-
	Pdy4g00650	751	Pfam	Flavin containing amine oxidoreductase	169	593	IPR002937	GO:0016491(InterPro)
	Pdy4g00650	751	SUPERFAMILY	FAD-NAD(P)-binding domain	158	595	IPR036188	-
	Pdy4g00650	751	Pfam	SWIRM domain	73	143	IPR007526	GO:0005515(InterPro)
	Pdy4g00650	751	Gene3D	-	56	155	IPR036388	-
	Pdy4g00650	751	SUPERFAMILY	Homeodomain-like	53	154	IPR009057	-
	Pdy4g00650	751	SUPERFAMILY	FAD-linked reductases, C-terminal domain	430	542	-	-
	Pdy4g00650	751	PANTHER	FLAVIN MONOAMINE OXIDASE	65	595	IPR050281	GO:0016491(PANTHER)
	Pdy4g00650	751	ProSiteProfiles	SWIRM domain profile.	51	152	IPR007526	GO:0005515(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pdy4g00650	K11450	[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:1.14.99.66]

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Pdy	Pdy-Chr1:104716070	Pdy4g00650	Pdy-Chr4:11789319	dispersed
	Pdy	Pdy-Chr4:11789319	Pdy9g01482	Pdy-Chr9:36976118	dispersed
	Pdy	Pdy-Chr4:11789319	Pdy7g02249	Pdy-Chr7:67614672	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Pdy	Amino_oxidase	5.5e-93	CL0063		TR	SWI/SNF-SWI3