AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00651 ATGGCGGCGTTCTTATCCTTCGCCATATCCCCAACCAACTTCAACTTCAGAGTGATTCAAAATTCAAATTCAACCGCAGTTCCATTGCATTCAACCTCTCGAATCTCCATACCTAATTACCATCAACAACATTCTCCTCCTTTGTTTCTTCCAGAGGTCGAAAGTGCAGTTGATGCCTTATATCCTGAATTCAGGGCGGTTGATAATCTTGTGGCACGGAATACAAGTAGAGTTCTAAAAGCTTTTCAGAATGCTAGGGTTGGATCTCATCACTTCGGTGGTTGCACTGGCTATGGGCATGAAGAAGCCGGAGGCCGAGAAGCCCTTGATCAAGCTTTTGCAGAAATTTTTGGTGCTGAATCTGCTATAGTCCGCTCACAGTTCTTTTCAGGCACTCATGCTATTACTTGTGCTCTTTTTGCTTTCTTGAGGCCAGGCGATGAGCTTTTGGCAGTAGCTGGTGCTCCTTACGATACGTTGGAAGAAGTTATAGGAATCAGGGATGGGAATGGATTAGGTTCATTGAAAGATTTTGGAATTAAGTATCGTGAAGTTGCACTTGCAGATGATGGAGGGCTTGATTGGGATGCTCTTGAGTTTGCTCTGCACCCTCAAACCAAATGTGCCCTTATACAAAGATCGTGTGGGTATTCATGGCGTAAAAGTTTAAGTGTGAATGAAATATCAAGGGCAATAAACATGATCAAGACACAAAATCCAAATTGTATGGTTATGGTGGATAATTGCTATGGGGAATTCACAGAGGCCATCGAACCTCCAATGGTGGGTGCAGATCTTATTGCAGGAAGTTTGATTAAAAATCCTGGTGGAACAATTGCACCATGTGGTGGATACGTTGCAGGGAAAGATAAATGGGTAAAAGCAGCTGCTGCTCGACTCTCTGCACCTGGTCTTGGTGTTGACTGTGGGTCAACTCCTGGTGACATTATGCGTACATTTTTTCAAGGGTTATACCTCTCACCTCAAATGGTTGGGGAAGCTATAAAGGGAGGCTTATTGATCGCTGAAGTTATGTCCACAAAAGGTTACAAAGTCCAGCCACTTCCTCGAGCACCCAGACACGACATAGTACAGGCTGTACAACTTGGAAGCCGGGAAAAGTTGCTTGCTTTCTGTGAAGCTGTACAAAGAAGCTCTCCTGTAAGCTCTTATACTAAGCCGATTGCAGGTTTAACAGCTGGCTATGCATCAGAGGTTATATTTGCCGATGGAACTTTCATTGATGGCAGTACAAGTGAGCTCTCTTGTGATGGACCCTTAAGAGAGCCTTTCACTGTTTTCTGTCAGGGTGGCACTCATTGGACTCAGTGGGGACTAGTTCTGGGTGAGGTTTTGAAATCATTGTAG 1368 44.37 MAAFLSFAISPTNFNFRVIQNSNSTAVPLHSTSRISIPNYHQQHSPPLFLPEVESAVDALYPEFRAVDNLVARNTSRVLKAFQNARVGSHHFGGCTGYGHEEAGGREALDQAFAEIFGAESAIVRSQFFSGTHAITCALFAFLRPGDELLAVAGAPYDTLEEVIGIRDGNGLGSLKDFGIKYREVALADDGGLDWDALEFALHPQTKCALIQRSCGYSWRKSLSVNEISRAINMIKTQNPNCMVMVDNCYGEFTEAIEPPMVGADLIAGSLIKNPGGTIAPCGGYVAGKDKWVKAAAARLSAPGLGVDCGSTPGDIMRTFFQGLYLSPQMVGEAIKGGLLIAEVMSTKGYKVQPLPRAPRHDIVQAVQLGSREKLLAFCEAVQRSSPVSSYTKPIAGLTAGYASEVIFADGTFIDGSTSELSCDGPLREPFTVFCQGGTHWTQWGLVLGEVLKSL 455
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00651 455 Gene3D - 101 309 IPR015421 -
Pdy4g00651 455 Gene3D - 50 100 - -
Pdy4g00651 455 Gene3D - 310 455 - -
Pdy4g00651 455 Pfam Methionine gamma-lyase 54 453 IPR009651 -
Pdy4g00651 455 SUPERFAMILY PLP-dependent transferases 76 426 IPR015424 -
Pdy4g00651 455 PANTHER CYS OR MET METABOLISM PYRIDOXAL-PHOSPHATE-DEPENDENT ENZYME 26 455 IPR009651 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00651 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr1:111357907 Pdy4g00651 Pdy-Chr4:11798402 dispersed