AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00652 ATGACTCATAAACAGGAGACTTTGCTTGGTTCTGGAGCTTGTGTAGCGATTACTGTTCTTTTATCACTGAAATTGCTAAATGATCATCTTGAGCATTGGAAGAAACCCAAGGAACAAAAGGCAATCTTAGTGATAATCCTCATGGCACCCATTTATGCTCTTGATTCCTATGTTGGATTGCTTGATATTCGTGGCAGTGAGACGTTTTTCATGTTCTTGGATTCGGTCAAAGAATGCTACGAGGGTCTGGTAATGGCCAAGTTCTTGGCTTTGTTGTACACGTATTTGAATATATCTATAAGCAAGAACATAGTCCCGGATGAGATCAAAGGACGAGAGATTCACCATTCGTTCCCAATGACTCTCTTCCAACCTCATTCGGTTCGTTTGAATCATCAAAACCTGAAGCTATTGAAATACTGGACATGGCAATTTGTAGTGATTCGACCCGTTTGCTCTGTTTTGATGATACTTCTTCAACTCCTAGACATATATCCTGATTGGCTTAGCTGGACATTCACTATGATCTTGAATGTTTCGGTATCATTGGCATTATATTCACTTGTGGTTTTCTACCATGTATTTGCTAAAGAATTGGCACCACATAAGCCACTTGCCAAGTTCTTATGTGTCAAAGGGATCGTTTTCTTCTGTTTCTGGCAGGGAGTTGTACTGAGTGGTCTCGTGGCAGTGGGCATAATAAAATCAGATCATTTTTGGCTTGACGTGACACATATCCAGCAAGCACTACAGAACGCGTTGGTGATTGTGGAGATGGTGTTTTTTTCAATCTTTCAGATGTATGCATACTCTGCTGCACCATATAAGGATCTTGATGTGAAAGAGAAGAAGAAAGACTGA 861 40.42 MTHKQETLLGSGACVAITVLLSLKLLNDHLEHWKKPKEQKAILVIILMAPIYALDSYVGLLDIRGSETFFMFLDSVKECYEGLVMAKFLALLYTYLNISISKNIVPDEIKGREIHHSFPMTLFQPHSVRLNHQNLKLLKYWTWQFVVIRPVCSVLMILLQLLDIYPDWLSWTFTMILNVSVSLALYSLVVFYHVFAKELAPHKPLAKFLCVKGIVFFCFWQGVVLSGLVAVGIIKSDHFWLDVTHIQQALQNALVIVEMVFFSIFQMYAYSAAPYKDLDVKEKKKD 286
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00652 286 Pfam Organic solute transporter Ostalpha 9 275 IPR005178 -
Pdy4g00652 286 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 7 279 IPR005178 GO:0005215(PANTHER)|GO:0006810(PANTHER)|GO:0016021(PANTHER)
Pdy4g00652 286 SMART Solute-trans-a-2 7 275 IPR005178 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00652 K14360 organic solute transporter subunit alpha
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr1:61684127 Pdy4g00652 Pdy-Chr4:11831327 dispersed
Pdy Pdy-Chr4:11831327 Pdy7g00488 Pdy-Chr7:15646456 dispersed
Pdy Pdy-Chr4:11831327 Pdy3g00258 Pdy-Chr3:5564855 transposed