AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00655 ATGGGTTTGCCTCTTAAACTCGCCGTACTTTCCGCCGCCGTCATGTCCACCGCCGTCATGATCAACTTCTTATCACCCTTCTTCATTAATTTCACAATCTCCGACCTTCCTATCATATACACCTCATTTATCTCCTGGCTCAAACCACCCTATCTTTACGTTGTTATCAACTGTATCATCATCACTATCGTCGCTTCTTCACGGTTGCAGTCCAAGCTCGACGGTCATTCTCACTCGCTCTCTACTTTCCCTGCACCGGTCCTGATCCCGGCTCACGAACCCGTCAAGGTTGTGCTTCCTGTTGAACTACCACCCGTTTATCATGAACCGGAAGTACCCGAACTGGTGAAGGTTGTTGACGGCGGTTATAACAGTGGTTCGAGATTTGGTCAAGTAATACCTGAACCCGAGTTCAGCGCTCCTGATGATGAGTTAATTACGGATAATTTTATGGATGAAGATATGAAGATCGCGAAGGAAGCTTATGAAGAAATCAAGAAAAGTAGCAGCAGGGACAGTGTTAATTATAATAAATCTGTAATCTCGATGCCTGTCGCCTTTACGCCGCCTTCGAAAATGAATCAAGTGGAGTTATCTTCACCACCGGTGCAGAAACCACCAGCCTCCGCCAGATTTGGCCACCGGAAACCTGCAAAAGCCACCCTCGAAGGTGGGCGGACATTGAGAGTTTCAAAACCCAAGCGGCAAGACACGCTGGAGACCACATGGAAGGCAATAACGGAGGGTCGTGCGGTACCTTTAACGAGACACCTCCGTAAATCCGACACGTGGGAGACCCACGTTAACGGTCGTCAAACTCACGTTAACTCCGAGGAGGAGTTACAGCTACCGATCGATGATCATAGTCACTCCGACAGGATGACAAAATCAGAAACGTTCGAGGTGAAGAGTGGCGGTGGCAGCCGGAAACCACCGGCAGCGCCGTCGAAGCTGAGCCGGTCGGGAGGGTCAGGAAGGCTGAGGAAAGAACCGTCGTTGGGGCAGGAGGAGTTGAACCGGAGAGTTGAAGCATTTATAAAGAAATTTAACGAGGATATGAGGTTGCAGAGGCAGGAATCGATGAACCAGTTTATGGAGATGATTAACCGTGGGGCCCATTAA 1122 49.47 MGLPLKLAVLSAAVMSTAVMINFLSPFFINFTISDLPIIYTSFISWLKPPYLYVVINCIIITIVASSRLQSKLDGHSHSLSTFPAPVLIPAHEPVKVVLPVELPPVYHEPEVPELVKVVDGGYNSGSRFGQVIPEPEFSAPDDELITDNFMDEDMKIAKEAYEEIKKSSSRDSVNYNKSVISMPVAFTPPSKMNQVELSSPPVQKPPASARFGHRKPAKATLEGGRTLRVSKPKRQDTLETTWKAITEGRAVPLTRHLRKSDTWETHVNGRQTHVNSEEELQLPIDDHSHSDRMTKSETFEVKSGGGSRKPPAAPSKLSRSGGSGRLRKEPSLGQEELNRRVEAFIKKFNEDMRLQRQESMNQFMEMINRGAH 373
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00655 373 MobiDBLite consensus disorder prediction 263 337 - -
Pdy4g00655 373 MobiDBLite consensus disorder prediction 193 217 - -
Pdy4g00655 373 Pfam Cotton fibre expressed protein 335 370 IPR008480 -
Pdy4g00655 373 PANTHER COTTON FIBER (DUF761) 16 371 - -
Pdy4g00655 373 MobiDBLite consensus disorder prediction 280 299 - -
Pdy4g00655 373 Pfam Domain of unknown function (DUF4408) 37 69 IPR025520 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00655 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr2:38696404 Pdy4g00655 Pdy-Chr4:11865034 dispersed
Pdy Pdy-Chr4:11865034 Pdy4g04411 Pdy-Chr4:96219258 wgd