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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00665 ATGGCTGCCATTACACTTTCTCCGGCTACTTCTTCTCAGTTTTCACAGTGTTGTTCTAGTAAGAGTGGAGCGTTTTCACCGACCAATGTACTAATGGCGAAACCGGCCGGATCTGTTATGGCGGGAAGGGAAAGGGGGATGAAGCTCACGTGCCACGCAGCAAGCATCGTCGCCGATGGAGTGCCGGCTATGGAAAGAAGGAAGCTCATGAACCTGTTGCTGCTCGGTGCCGTTGGTCTACCCTCCGCCGGCATGTTGGTTCCTTACACTGATTTCTCCCCTTCGCCTGGTTCAGGGACTTCTGGAGGTGGAACCACTGTTACAGATGAGTTTGGTAATGACATAATAGCATCAGAATGGCTAAAGACTCATGGACCTGGTGACAGAACCCTTACTCATGGCTTAAAGGGAGATCCCACATACCTTATGGTTGAGAACAACACGACTCTTGCAACCTATGGGATCAATGCAGTATGCACCCATCTGGGGTGTATCGTGCCATGGAACACAGTAGAGAAGAAGTTTATCTGCCCGTGCCATGGTTCTCACTACAACAATGAGGGCATGGTTATTAGGGGTCCTGCTCCTGTGTCTTTGGAACTGGCTCGTGTGGATATAGACAATGGCAAAGTGGTGTTTGCTCCATGGCCAGCAACTGATTTCAGAACAGGCCATGCTCCATGGTGGTCTTAG 693 50.36 MAAITLSPATSSQFSQCCSSKSGAFSPTNVLMAKPAGSVMAGRERGMKLTCHAASIVADGVPAMERRKLMNLLLLGAVGLPSAGMLVPYTDFSPSPGSGTSGGGTTVTDEFGNDIIASEWLKTHGPGDRTLTHGLKGDPTYLMVENNTTLATYGINAVCTHLGCIVPWNTVEKKFICPCHGSHYNNEGMVIRGPAPVSLELARVDIDNGKVVFAPWPATDFRTGHAPWWS 230
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00665 230 CDD Rieske-cytochrome-b6f 109 230 - -
Pdy4g00665 230 PRINTS Rieske 2Fe-2S subunit signature 154 165 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Pdy4g00665 230 PRINTS Rieske 2Fe-2S subunit signature 187 199 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Pdy4g00665 230 PRINTS Rieske 2Fe-2S subunit signature 175 187 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Pdy4g00665 230 Gene3D Single helix bin 52 94 - -
Pdy4g00665 230 FunFam Cytochrome b6-f complex iron-sulfur subunit 96 230 - -
Pdy4g00665 230 SUPERFAMILY ISP domain 59 229 IPR036922 GO:0051537(InterPro)
Pdy4g00665 230 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 47 216 IPR014349 GO:0005886(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Pdy4g00665 230 Pfam Rieske [2Fe-2S] domain 151 199 IPR017941 GO:0051537(InterPro)
Pdy4g00665 230 Gene3D - 95 230 IPR036922 GO:0051537(InterPro)
Pdy4g00665 230 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 117 213 IPR017941 GO:0051537(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00665 K02636 cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
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Event-related genes

Select Gene_1 Gene_2 Event_name
132709 Pdy4g00665 Pdy9g01990
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:12026755 Pdy9g01990 Pdy-Chr9:43436042 wgd