AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00669 ATGCAACCCCAGAAACCCCTACCGGAATCTGACCTACCCTCCCTCGCCGCCATCAAAGTCAAGTCTTCCTCCCCTCGTTTCCGTCCTACTGCCAACCCTTCCGCCACCGAAACCCCTACTGCCGGCGCCCAACGCCGGATAGGCATCGCCGTCGATCTTAGCGACGAGAGTGCCTTTGCTGTCAAGTGGGCCGTCCATCAGTATCTTCGCCCTGGTGATGCCGTGATCCTCATCCACGTCCGTCCTACTTCCGTTCTTTACGGCGCTGACTGGGGCTCTGTTGACCTTTCCATCGTTGACACTGACGATGAGGCATCGAAGCTAAAGCTTGAAGACGATTTTGATACTTTCACGACTACCAAATCCGCTGACCTAGCACAGCCTCTGGTGGACGCGCACATACCGTATAAGATCCATATAGTTAAAGATCATGACATGAAGGAGAGGCTTTGTTTAGAGGTGGAGAGGCTAGGGTTGAGTGCTGTGATTATGGGAAGCCGAGGGTTCGGTGCGACGAAACGCGGGAGCGACGGCCGGCTTGGGAGTGTTAGTGATTACTGTGTACGCCACTGTGTGTGTCCGGTGGTGGTTGTGAGGTATCCCGATGAGAAGGATGCTTCTGCTTCTGCTGAGCCTGTGGTTTCGGTGGCTACTGCTGACGATGAAGAAGACGAACCTGAATATCATGATGCAACTGATGAGCGAAAATAA 711 53.87 MQPQKPLPESDLPSLAAIKVKSSSPRFRPTANPSATETPTAGAQRRIGIAVDLSDESAFAVKWAVHQYLRPGDAVILIHVRPTSVLYGADWGSVDLSIVDTDDEASKLKLEDDFDTFTTTKSADLAQPLVDAHIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGATKRGSDGRLGSVSDYCVRHCVCPVVVVRYPDEKDASASAEPVVSVATADDEEDEPEYHDATDERK 236
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00669 236 MobiDBLite consensus disorder prediction 20 43 - -
Pdy4g00669 236 Pfam Universal stress protein family 45 199 IPR006016 -
Pdy4g00669 236 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 45 202 - -
Pdy4g00669 236 Gene3D HUPs 34 211 IPR014729 -
Pdy4g00669 236 MobiDBLite consensus disorder prediction 25 41 - -
Pdy4g00669 236 MobiDBLite consensus disorder prediction 204 236 - -
Pdy4g00669 236 PANTHER OS01G0783500 PROTEIN 8 235 IPR044162 -
Pdy4g00669 236 CDD USP-Like 46 198 - -
Pdy4g00669 236 PRINTS Universal stress protein signature 44 62 IPR006015 -
Pdy4g00669 236 PRINTS Universal stress protein signature 177 199 IPR006015 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00669 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:12088562 Pdy7g01203 Pdy-Chr7:50514085 dispersed
Pdy Pdy-Chr4:12088562 Pdy4g04438 Pdy-Chr4:96664342 wgd