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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00720 ATGGCGATCTCACGCCACAAACACACACTAATCCTCACTCTACTATGTGTTCTTCTCCCGTTTTCTCAATCGGAATCGGCGCCGGAATCGGTGGCGGAATCCTCCATTCACGATCTCCTCAAAAGCAAAGGACTGCCGGTCGGCCTGTTCCCCAAGGAAGTCGAATCATTCACTCTCTACGACACTGGCCTTCTAGAGGTCTTCCTGAGAGGTCCGTGCTTAACCAAATTTGACACCATGGCGTTCTACGAAAGCACCGTCAGAGCTAACCTTACTTACGGCAGCCTTACCGGCGTTCAAGGCCTCTCTCAGGAAGAGCTCTTCCTCTGGCTTCCGGTCAAAGATATCATCGTCGACGATCCGAAATCTGGACTCATATTATTCGACATTGGCCTCGCTCACAAACAGCTTTCTCTCTCGCTATTCGAAGATCCACCTGACTGCAAATCCGAAGGTGGTTTGAATTTGAAGAAGAAATCTAGAAAGGAGAGAGGATTTGCTGCTCAAATGTAG 513 49.32 MAISRHKHTLILTLLCVLLPFSQSESAPESVAESSIHDLLKSKGLPVGLFPKEVESFTLYDTGLLEVFLRGPCLTKFDTMAFYESTVRANLTYGSLTGVQGLSQEELFLWLPVKDIIVDDPKSGLILFDIGLAHKQLSLSLFEDPPDCKSEGGLNLKKKSRKERGFAAQM 170
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00720 170 FunFam Uncharacterized protein At3g07460 23 153 - -
Pdy4g00720 170 PANTHER T31J12.3 PROTEIN-RELATED 27 149 IPR007493 -
Pdy4g00720 170 SUPERFAMILY At5g01610-like 8 150 IPR036758 -
Pdy4g00720 170 Gene3D - 24 151 IPR036758 -
Pdy4g00720 170 Pfam Protein of unknown function, DUF538 36 143 IPR007493 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00720 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4116030 Pdy Pdy4g00720 Pdy-Chr4:13201650 Pdy8g02586 Pdy-Chr8:61684098
4136406 Pdy Pdy4g00720 Pdy-Chr4:13201650 Pdy5g02512 Pdy-Chr5:74884309