AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00727 ATGGGCTCAGAACAATTTTATGGTTATAGATTGACCAGTCCAGGCTCATCTTACCCTTCTTCTCACCCAAAAGTTCCCTTAATTCCCACAAGACTGATTGAATCCTTAAAGTTTGACACAAAAGACTCTCCCAACTGTCCTTTTGTAACCCCGTTTGATTCAGATACATTCACGACATTGAGCTCAGGTGCTAGCCCTTCTTCCCTTGAAGATTGTAGCTCATTCAACCAATCAGCCGGAAGTGTTCACTGCATGAAAAATGCTCTTCAGAATATAGAGACAACTCTTATGGCTCCAGATGATGAAGTATCCATGCCCATGAACCCACCCTCTGGTCAATCTCAAACCAGGTGGCCACAACAGTGGACCCATGAACCCACTGGTTCGAGCCACACTCAGGCTCTATATAACCCACGATTCGGTCTATCTGGTAATGGCTATAATATTAACAGTAATAATCTAAAGCAGTTGCTTATTGCATGTGCAAGTGCTCTAGCTGGAAACAAGCTTAATGAATTTGAGGAATTAGTTGAACGTGCACGGGCTTCTGTGTCTATTAGTGGCGACCCGATACAGAGGCTAGGTGCTTATATGGTTGAAGGGTTGGTGGCGAGACGCGAGTTATCCGGGAATAATATATATCGAGCCTTAAGATGCCGGGAACCTGCAGGGAAGGAGTTACTTTCTTACATGCATCTTTTATATGAAATATGTCCTTACTTGAAATTCGGATACATGGCTGCAAATGGTGCTATAGCTGAAGCTTGCAGAACTGAAGACCGGATCCATATTATCGACTTCCAGATAGGTCAAGGGACCCAATGGATGACCCTTTTACAAGCACTTGCCGCCCGACCTGGGGGCCCACCTCATGTTCGGATCACAGGAATCGACGACCCGGTCTCGAAATACGCGCGTGGAGACAGTTTACAGTTGGTTGGAAAACGGTTAGAAGCCGTTTCTTTGAAGTTTAAGATTCCAATCGAGTTTCACCCGCTTGCAGTTTATGCTCCTTTTGTGACTAAAGAGATGCTCGATGTTAGACCCGGTGAAGGGCTGGCGGTTAACTTCCCGCTTCAGCTCCACCACATGCCTGATGAGAGTGTTGATGTGAATAACCCACGGGACGAGCGTTTGAGAATGGTGAAGTCGCTTTCACCCAAAGTTGTTACATTAGTCGAGCAAGAATCAAACACAAACACAGCCGCTTTCTTTCCAAGATTCTTGGAAGCACTAGATTTCTACTCGGCGATGTTTGAGTCGATCGATGCGGCTTTATCACGCGATAGGAAAGAAAGAATAAACGTGGAACAACACTGTCTGGCACGAGACATAGTAAACATCATAGCTTGCGAGGGTAAGGAGAGAGTTGAAAGGCATGAGCTGTTTAGGAAATGGAGATCTCGGTTAACAATGGCGGGTTTCAAACAGTATCCATTGAGCGCGTATGTGAATTCGGTTATCGGGAACTTGCTAAAGTGTTACTCTGAACATTATACTTTGGTGGAGAGAGATGGAGCCATGCTGTTGGGATGGAAAGATAGAAACCTTATATCAGCATCTGCTTGGCACTGA 1575 45.33 MGSEQFYGYRLTSPGSSYPSSHPKVPLIPTRLIESLKFDTKDSPNCPFVTPFDSDTFTTLSSGASPSSLEDCSSFNQSAGSVHCMKNALQNIETTLMAPDDEVSMPMNPPSGQSQTRWPQQWTHEPTGSSHTQALYNPRFGLSGNGYNINSNNLKQLLIACASALAGNKLNEFEELVERARASVSISGDPIQRLGAYMVEGLVARRELSGNNIYRALRCREPAGKELLSYMHLLYEICPYLKFGYMAANGAIAEACRTEDRIHIIDFQIGQGTQWMTLLQALAARPGGPPHVRITGIDDPVSKYARGDSLQLVGKRLEAVSLKFKIPIEFHPLAVYAPFVTKEMLDVRPGEGLAVNFPLQLHHMPDESVDVNNPRDERLRMVKSLSPKVVTLVEQESNTNTAAFFPRFLEALDFYSAMFESIDAALSRDRKERINVEQHCLARDIVNIIACEGKERVERHELFRKWRSRLTMAGFKQYPLSAYVNSVIGNLLKCYSEHYTLVERDGAMLLGWKDRNLISASAWH 524
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00727 524 MobiDBLite consensus disorder prediction 108 130 - -
Pdy4g00727 524 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 123 523 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Pdy4g00727 524 Pfam GRAS domain family 154 523 IPR005202 -
Pdy4g00727 524 ProSiteProfiles GRAS family profile. 145 524 IPR005202 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00727 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4116035 Pdy Pdy4g00727 Pdy-Chr4:13317896 Pdy7g02590 Pdy-Chr7:72360734
4136410 Pdy Pdy4g00727 Pdy-Chr4:13317896 Pdy4g01080 Pdy-Chr4:20602917
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pdy1g01527 . 1 479 GRAS Transcription Factor family AT1G50420 62.292 0.0 581.0
Pdy1g02440 . 241 651 GRAS Transcription Factor family AT3G54220 81.553 0.0 669.0
Pdy1g02741 . 296 650 GRAS Transcription Factor family AT3G54220 55.587 3.42e-140 416.0
Pdy1g03087 . 25 767 GRAS Transcription Factor family AT1G07530 48.945 0.0 668.0
Pdy1g03451 . 73 713 GRAS Transcription Factor family AT2G37650 52.607 0.0 651.0
Pdy1g04193 ACH 29 640 GRAS Transcription Factor family AT5G52510 45.216 5.39e-140 421.0
Pdy1g04458 . 86 767 GRAS Transcription Factor family AT1G07530 47.033 0.0 578.0
Pdy1g05528 . 1 581 GRAS Transcription Factor family AT2G01570 61.008 0.0 690.0
Pdy2g00171 . 1 582 GRAS Transcription Factor family AT2G01570 60.884 0.0 685.0
Pdy2g00273 ACH 35 405 GRAS Transcription Factor family AT5G41920 68.7 0.0 518.0
Pdy2g03066 . 1 654 GRAS Transcription Factor family AT1G63100 51.77 0.0 584.0
Pdy2g03209 . 205 555 GRAS Transcription Factor family AT4G00150 48.077 6.21e-104 326.0
Pdy2g03289 . 170 546 GRAS Transcription Factor family AT3G03450 29.016 1.18e-50 180.0
Pdy2g03291 . 170 547 GRAS Transcription Factor family AT3G03450 29.61 5.64e-55 191.0
Pdy2g03292 . 178 547 GRAS Transcription Factor family AT3G03450 29.688 1.56e-50 180.0
Pdy2g03293 . 178 547 GRAS Transcription Factor family AT3G03450 29.688 2.93e-50 180.0
Pdy2g04122 . 1 525 GRAS Transcription Factor family AT4G17230 52.509 0.0 538.0
Pdy3g00303 . 40 444 GRAS Transcription Factor family AT1G55580 45.991 3.87e-119 353.0
Pdy3g00538 . 42 490 GRAS Transcription Factor family AT5G48150 64.719 0.0 583.0
Pdy3g00660 . 161 529 GRAS Transcription Factor family AT1G14920 35.949 2.12e-75 246.0
Pdy3g02509 . 1 584 GRAS Transcription Factor family AT5G66770 54.983 0.0 559.0
Pdy3g02677 . 1 530 GRAS Transcription Factor family AT4G37650 55.752 0.0 559.0
Pdy3g02694 . 12 409 GRAS Transcription Factor family AT3G49950 60.432 0.0 513.0
Pdy4g00384 . 34 490 GRAS Transcription Factor family AT5G48150 59.785 0.0 554.0
Pdy4g00727 . 19 489 GRAS Transcription Factor family AT5G48150 53.535 2.18e-177 506.0
Pdy4g00855 . 169 545 GRAS Transcription Factor family AT3G03450 35.623 3.36e-69 230.0
Pdy4g00921 . 23 445 GRAS Transcription Factor family AT1G55580 45.853 4.65e-109 326.0
Pdy4g01080 . 36 490 GRAS Transcription Factor family AT5G48150 62.5 0.0 568.0
Pdy4g02227 ACH 216 582 GRAS Transcription Factor family AT2G01570 26.817 1.91e-24 105.0
Pdy4g02892 . 86 767 GRAS Transcription Factor family AT1G07530 49.641 0.0 634.0
Pdy4g03177 . 70 714 GRAS Transcription Factor family AT2G37650 55.022 0.0 674.0
Pdy4g03784 ACH 94 555 GRAS Transcription Factor family AT4G00150 49.73 8.60e-163 477.0
Pdy5g01796 . 77 516 GRAS Transcription Factor family AT5G17490 25.636 2.38e-25 107.0
Pdy5g01801 . 288 583 GRAS Transcription Factor family AT5G66770 26.797 6.81e-18 84.3
Pdy5g01803 . 170 515 GRAS Transcription Factor family AT5G17490 25.401 1.22e-18 86.7
Pdy5g01805 ACH 144 544 GRAS Transcription Factor family AT3G03450 24.074 6.68e-20 90.9
Pdy5g02985 . 316 767 GRAS Transcription Factor family AT1G07530 50.773 9.06e-165 486.0
Pdy5g02986 . 389 764 GRAS Transcription Factor family AT1G07530 53.457 3.51e-147 437.0
Pdy5g02987 . 296 764 GRAS Transcription Factor family AT1G07530 49.79 6.45e-162 479.0
Pdy5g02988 . 20 766 GRAS Transcription Factor family AT1G07530 47.375 0.0 617.0
Pdy5g03294 . 149 593 GRAS Transcription Factor family AT1G21450 63.717 0.0 577.0
Pdy5g03314 . 177 545 GRAS Transcription Factor family AT3G03450 32.266 1.17e-51 182.0
Pdy6g00728 ACH 30 640 GRAS Transcription Factor family AT5G52510 45.008 1.95e-133 403.0
Pdy6g01503 . 139 515 GRAS Transcription Factor family AT5G17490 35.351 6.00e-59 201.0
Pdy6g01929 . 169 545 GRAS Transcription Factor family AT3G03450 43.864 2.12e-98 311.0
Pdy6g02263 . 15 478 GRAS Transcription Factor family AT1G50420 36.111 1.11e-101 309.0
Pdy6g02670 ACH 26 467 GRAS Transcription Factor family AT4G36710 46.97 5.16e-122 363.0
Pdy6g03147 . 160 529 GRAS Transcription Factor family AT1G14920 34.343 7.86e-68 227.0
Pdy6g03796 ACH 9 510 GRAS Transcription Factor family AT3G13840 45.076 3.71e-143 421.0
Pdy7g00160 . 4 482 GRAS Transcription Factor family AT1G50420 57.557 0.0 542.0
Pdy7g00527 . 18 409 GRAS Transcription Factor family AT3G49950 46.192 2.56e-122 360.0
Pdy7g01610 . 150 509 GRAS Transcription Factor family AT1G66350 30.709 1.87e-60 206.0
Pdy7g01992 ACH 16 510 GRAS Transcription Factor family AT3G13840 45.72 7.08e-148 432.0
Pdy7g02413 . 27 529 GRAS Transcription Factor family AT1G14920 48.356 1.14e-160 466.0
Pdy7g02590 . 34 490 GRAS Transcription Factor family AT5G48150 65.458 0.0 619.0
Pdy8g00850 . 4 482 GRAS Transcription Factor family AT1G50420 64.718 0.0 619.0
Pdy8g01716 . 45 545 GRAS Transcription Factor family AT3G03450 63.415 0.0 664.0
Pdy8g01971 ACH 37 486 GRAS Transcription Factor family AT4G36710 50.108 4.40e-139 409.0
Pdy8g03040 . 86 767 GRAS Transcription Factor family AT1G07530 45.706 0.0 572.0
Pdy8g03393 ACH 31 640 GRAS Transcription Factor family AT5G52510 39.843 3.34e-123 376.0
Pdy9g00889 . 1 482 GRAS Transcription Factor family AT1G50420 62.526 0.0 587.0
Pdy9g02155 . 40 444 GRAS Transcription Factor family AT1G55580 48.611 7.36e-125 370.0
Pdy9g02939 . 141 530 GRAS Transcription Factor family AT4G37650 53.865 5.42e-142 414.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Pdy GRAS 1.1e-128 CL0063 TF GRAS