AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00733 ATGACTAGCGTACAACTTGAGGTTGTATCAGAAGACCATTCTCCACATAAATGGTGTGTTCCTTTAAAAGAAGACGTTTTTTGTGCCTTTATGGCGAAAGGAGGTTCAATCGTGCATAAGAACCAGTGTGTGGATTGGTTTCAAACAGACGCGTGTTATGTTTTAAGATCCGAAATACCAAAATTAGAAAAAAACAGCATTCGAGTTTATGTTGAGAAAGGGAAGGTTGTGGAGATTAGTGGGCTATGGAAGCACAAGGGAGAATCAAGAACAATAGACTGGCGAAGTGGCGAATGGTGGGAACATGGCTTTGTTAGGAGGCTTGAATTGCCTGAAAATGTAGACTGGAAGAAAATCGAGGCGTATGTGAATAACGACAACATCTTGGACATTAGACTTCCAAAAACTTCATTGGATTCTGATGTATATCGAGGAAACGAAGGGGTGAGCAAAGATTCTGCATCTGCAAGCGCTTGA 477 41.3 MTSVQLEVVSEDHSPHKWCVPLKEDVFCAFMAKGGSIVHKNQCVDWFQTDACYVLRSEIPKLEKNSIRVYVEKGKVVEISGLWKHKGESRTIDWRSGEWWEHGFVRRLELPENVDWKKIEAYVNNDNILDIRLPKTSLDSDVYRGNEGVSKDSASASA 158
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00733 158 Gene3D - 28 142 IPR008978 -
Pdy4g00733 158 PANTHER 21.7 KDA CLASS VI HEAT SHOCK PROTEIN 3 40 - -
Pdy4g00733 158 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 35 152 IPR002068 -
Pdy4g00733 158 SUPERFAMILY HSP20-like chaperones 36 137 IPR008978 -
Pdy4g00733 158 Pfam Hsp20-alpha crystallin family 46 138 IPR002068 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00733 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4116039 Pdy Pdy4g00733 Pdy-Chr4:13368529 Pdy8g03091 Pdy-Chr8:68081904
4136412 Pdy Pdy4g00733 Pdy-Chr4:13368529 Pdy4g02911 Pdy-Chr4:76735915