AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00796 ATGAGGGTTCAAATCGCTCGTAATTTAAGCTTAGCGTTGGATTATCGCAGAGCTGTCACGTGTTCTTTTGCATCGATTCGGTCCCTCTCGGTCGCGGCGGCGGATTATTCTTTTGCTAAGATTCGTAGGAAGAGTTACCTTTTAGGCCGGTTTTATTTATCGACTGTTGCTTCAGTTCGAGATTCTTCTTGCGTTAAGACTATGGGTTCGCAAGCGGCGGCGGAAGTGGAGTGGCCGGCTAATAAAGTTAGGGACTCTTTTATGAAGTTCTTTGAAGAAAGGAATCATGTTTATTGGAAATCAAGCCCGGTTGTTCCTGTCAATGATCCCACGCTTCTTTTTGCCAATGCTGGAATGAATCAGTTCAAGCCTATTTTCTTGGGTACTGCTGACCCTAACACTTCCTTGAGCAAACTGACTCGTGCCTGCAACACTCAGAAGTGCATCCGAGCTGGTGGGAAACATAATGATCTTGATGATGTCGGCAAAGACACATATCATCACACTTTCTTTGAAATGCTTGGCAACTGGTCATTTGGCGATTATTTCAAAGAGGAAGCCATTGGATGGGCATGGGAACTTCTTACAGTGGTTTATAAGCTACCTACTGATCGAATATATGCTACTTATTTTGGAGGTGATGAGAAATTGGGCCTTCCTGCTGATAATGAAGCTAGAGATATCTGGCTCAAATTTTTGCCACCTGCACGAGTTTTGCCTTTTGGTTGTAAAGACAACTTCTGGGAGATGGGTGATACCGGGCCTTGTGGACCCTGTACTGAAATTCACTTCGATAGGATTGGTGGCCGTGACGCTGCTGAGTTGGTTAATAATGATGACCCTACATTGATTGAAATATGGAATAATGTGTTTATTCAGTTTAACAGGGAAGCTGATGGTTCTTTGAAACCACTGCCTGCCAAACATGTGGATACGGGAATGGGTTTTGAAAGATTGACTTCTATTCTTCAGAACAAGTTGAGCAACTATGATACTGATGTCTTTATACCTATTTTTGATGCTATTCAGCAGGCAACTGGCGCTAGACCATATTCAGGCAAAGTGGGTGCAGATGATGTGGACGGAATTGACATGGCATACAGAGTTGTTGCTGACCACATCAGAACTCTTTCAGTTGCCATTGCGGATGGTTCTCGTCCAGGCAATGAAGGGCGTGAATATGTTTTGCGCCGCATTCTTCGCCGAGCTGTACGTTATGGAACAGAAGTACTTAAAGCACAGCAAGGATTCTTCAATGGATTGGTAAAAGTAGTGGTGGACGTAATGGGCCATGTTTTTCCTGAGCTAAAACAACAGGAGGCGCACATTAGAGAGGTCATAGCTGAAGAGGAAGCAAGTTTTGGGAGGACGTTACTTCATGGAATTGAGAAGTTCAAGAAGACAGCGCAAGATGTTCAGGGAAAGATATTTAGTGGACAGGATGCATTTGTTTTGTGGGATACTTATGGATTCCCATTGGATCTGACTCAGTTAATGGCAGAAGAAAGAGGGTTGGTGGTTGATGTTGATGGTTTTAATGCTGCTATGAATGAAGCTAGAGAAAGATCAAGGAACGCCCAGAATAAGCAAGCTGCCGTTGCAATTGTCATGGATGCAGATGCAACCTCAGCATTGCATAAGAGAGGGGTGGCTGCAACAAATGATAGTTTCAAGTTTACATGGTTTAAGGACCACAAAAGCGTGATAAAAGCCATTTACACTGGTAGCGAGTATGTGGAACGTGCTGATGCTGGTGATGATGTTGGTATAATTCTTGAGAGCACAAGCTTTTATGCTGAACAAGGTGGTCAGATATTTGATACCGGACTACTTGGAGGCGCCTCTGGAACGTTTGAAGTTTGTAATGTTCAAATTTATGGTGGTTTTGTGCTCCATCTTGGTAAAATTAGTGGGGAGTCTGGCCGATTTTGTGTAGGAGATGAAGTGGTTTGTAAGGTTGACTACGAAAGGCGCCAGCGCATTGCTCCTAATCATACCTGTACACACATGTTAAATTTTGCTCTCAGGGAAGTACTTGGGAATCATATTGACCAGAAAGGATCCATTGTTCTTCCAGAAAAATTAAGATTTGACTTCTCACATGGGAAGCCTGTAAAGCCAGAAGACCTTCGTAGAATTGAATCCATTGTGAATGACCAAATTAAAGCTGAATTAGAGGTTTCTGCAAAGGAGGCAAGCCTTGCTGATGCAAAGCGAGTAAATGGTTTACGAGCTGTTTTTGGTGAAGTGTATCCTGATCCAGTTAGGATTGTTGCAATTGGTCGACAAGTGGAAGATCTTCTGGATGATCCTGAAAATGAAGAATGGGTGTCCATATCTGCCGAGCTATGTGGAGGGACCCATATTTCAAACACACGAGAGGCGAAGGCATTTGCTCTTTTGTCTGAGGAGGGAATTGCTAAAGGGATTCGGAGAGTTACTGCTGTAACAACAGACTATGCTTTTGAGGCTATTAAAAAGGCATCTGAACTTGAGCAGGAAGTTGATCAGGCATCAAAGCTGGAAGGAAGCCTTCTTGAACAGAAAGTGACCTCTTTAAATGGTCAAGTAGAGTCTGCCTCCATTCCAACTGCAAAGAAGGCTGATCTCAAGGCCAAAATCTCTATCCTTCAGAATCAAGTAATAAAAGCAAAAAAGAAGACTGCTGAAGAGAACATACGCAAAGCTGTTGAAGCTGCCACTAATGCAGCTGAAGTTGCCTCTTCTCAAGGAAAGGCTTTCTGCATCTCACATGTTGGTGTAGGCTCGGATACTGCTGCTATTCGTGAAGCGGTTGTCAAAGTTATGGAGCAGAAGGGAATGGCGGTGATGGTTTTTAGCACTGATGAGCAATCAAAGAAGGCCTTAGTTTGTGCTGGCGTGCCAGAAAAAAGCGATAAAAGCAACCACTTGAAAGTTTTAGAGTGGCTGAAGGCGGCACTGAAGCCCCTCGAAGGCAAAGGTGGTGGTGGGAAAGGCGGTCTTGCTCAAGGCCAGGGACCCGATATAAAACATGTGGATGAAGCAATCGACGTTGCCAAGTCATTTGCATCACTCAAACTGGGCTGA 3069 43.99 MRVQIARNLSLALDYRRAVTCSFASIRSLSVAAADYSFAKIRRKSYLLGRFYLSTVASVRDSSCVKTMGSQAAAEVEWPANKVRDSFMKFFEERNHVYWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTVVYKLPTDRIYATYFGGDEKLGLPADNEARDIWLKFLPPARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAAELVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKLSNYDTDVFIPIFDAIQQATGARPYSGKVGADDVDGIDMAYRVVADHIRTLSVAIADGSRPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVDVMGHVFPELKQQEAHIREVIAEEEASFGRTLLHGIEKFKKTAQDVQGKIFSGQDAFVLWDTYGFPLDLTQLMAEERGLVVDVDGFNAAMNEARERSRNAQNKQAAVAIVMDADATSALHKRGVAATNDSFKFTWFKDHKSVIKAIYTGSEYVERADAGDDVGIILESTSFYAEQGGQIFDTGLLGGASGTFEVCNVQIYGGFVLHLGKISGESGRFCVGDEVVCKVDYERRQRIAPNHTCTHMLNFALREVLGNHIDQKGSIVLPEKLRFDFSHGKPVKPEDLRRIESIVNDQIKAELEVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGRQVEDLLDDPENEEWVSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDYAFEAIKKASELEQEVDQASKLEGSLLEQKVTSLNGQVESASIPTAKKADLKAKISILQNQVIKAKKKTAEENIRKAVEAATNAAEVASSQGKAFCISHVGVGSDTAAIREAVVKVMEQKGMAVMVFSTDEQSKKALVCAGVPEKSDKSNHLKVLEWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFASLKLG 1022
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00796 1022 SUPERFAMILY Translation proteins 584 653 IPR009000 -
Pdy4g00796 1022 Coils Coil 821 848 - -
Pdy4g00796 1022 Gene3D - 908 1017 - -
Pdy4g00796 1022 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 755 813 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Pdy4g00796 1022 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 331 532 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Pdy4g00796 1022 SMART tRNA-SAD-4 755 814 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Pdy4g00796 1022 Hamap Alanine--tRNA ligase [alaS]. 78 1021 IPR023033 GO:0004813(InterPro)
Pdy4g00796 1022 FunFam Alanine--tRNA ligase 909 1017 - -
Pdy4g00796 1022 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 78 827 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Pdy4g00796 1022 CDD AlaRS-core 80 326 - -
Pdy4g00796 1022 NCBIfam alanine--tRNA ligase 82 1000 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Pdy4g00796 1022 SUPERFAMILY Class II aaRS and biotin synthetases 79 330 IPR045864 -
Pdy4g00796 1022 PANTHER ALANYL-TRNA SYNTHETASE 75 1018 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Pdy4g00796 1022 Pfam DHHA1 domain 870 1016 IPR003156 GO:0003676(InterPro)
Pdy4g00796 1022 Coils Coil 509 529 - -
Pdy4g00796 1022 FunFam Alanine--tRNA ligase, cytoplasmic 654 829 - -
Pdy4g00796 1022 PRINTS Alanyl-tRNA synthetase signature 284 295 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Pdy4g00796 1022 PRINTS Alanyl-tRNA synthetase signature 311 324 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Pdy4g00796 1022 PRINTS Alanyl-tRNA synthetase signature 156 167 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Pdy4g00796 1022 PRINTS Alanyl-tRNA synthetase signature 368 384 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Pdy4g00796 1022 PRINTS Alanyl-tRNA synthetase signature 392 405 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Pdy4g00796 1022 FunFam Alanine--tRNA ligase, cytoplasmic 77 327 - -
Pdy4g00796 1022 Pfam tRNA synthetases class II (A) 82 657 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Pdy4g00796 1022 Gene3D Bira Bifunctional Protein; Domain 2 79 327 IPR045864 -
Pdy4g00796 1022 Gene3D - 551 653 - -
Pdy4g00796 1022 FunFam Alanine--tRNA ligase 552 652 - -
Pdy4g00796 1022 Gene3D - 654 830 - -
Pdy4g00796 1022 Coils Coil 867 899 - -
Pdy4g00796 1022 SUPERFAMILY ThrRS-AlaRS common domain 653 825 IPR018163 GO:0000166(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00796 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4106668 Pdy Pdy1g03534 Pdy-Chr1:88418240 Pdy4g00796 Pdy-Chr4:14128726
4116081 Pdy Pdy4g00796 Pdy-Chr4:14128726 Pdy9g02329 Pdy-Chr9:47507291