AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00810 ATGGCCAAAAGCTCCTTCAAACTGGAACACCCTCTGGAGAGGCGCCAAGCTGAGGCTGCTCGTATCAGGGAAAAGTATCCTGACAGAGTTCCGGTTATCGTGGAGAAGGCTGAAAGAACCGACATACCTGACATAGACAAGAAAAAATATCTGGTACCTGCTGATTTGACAGTTGGGCAATTTGTGTATGTGGTAAGAAAAAGGATTAAGCTGAGTGCTGAAAAGGCTATTTTTATCTTTGTGAAGAATGTTCTGCCACCAACTGCTGCCATGATGGCTGCGATCTATGAAGAAAACAAAGACGAGGATGGTTTCCTATACATGACATACAGTGGAGAGAATACGTTTGGAATACTTTGA 360 43.61 MAKSSFKLEHPLERRQAEAARIREKYPDRVPVIVEKAERTDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNVLPPTAAMMAAIYEENKDEDGFLYMTYSGENTFGIL 119
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00810 119 Gene3D - 1 118 - -
Pdy4g00810 119 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Pdy4g00810 119 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A-1B LIGHT CHAIN 3-RELATED 3 117 IPR004241 GO:0006995(PANTHER)
Pdy4g00810 119 CDD Ubl-ATG8 12 114 - -
Pdy4g00810 119 FunFam Autophagy-related protein 1 117 - -
Pdy4g00810 119 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00810 K08341 GABA(A) receptor-associated protein
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
132018 Pdy3g00422 Pdy4g00810
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4115470 Pdy Pdy3g04947 Pdy-Chr3:115727152 Pdy4g00810 Pdy-Chr4:14329711
4134786 Pdy Pdy2g01257 Pdy-Chr2:22063005 Pdy4g00810 Pdy-Chr4:14329711
4137425 Pdy Pdy5g02047 Pdy-Chr5:65849383 Pdy4g00810 Pdy-Chr4:14329711
4140740 Pdy Pdy4g04524 Pdy-Chr4:97767813 Pdy4g00810 Pdy-Chr4:14329711
4174981 Pdy Pdy3g00422 Pdy-Chr3:7764255 Pdy4g00810 Pdy-Chr4:14329711