AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00825 ATGAATATTGAAATCTGTGGGAGGCATGCGCTTCTCTTCGACGACGATACCGCCGCAGCCTTCGTAAACTCCGACGACGCACTTGTTGAATGGAATTCTCTGTTAATTGACCGTTACGACGTCCGCCATCTGCTGTCCAGCCCTCCGCCTTCTCGGAGGCGGCGCAATCCACAAACATCTCACTCATCTTCTGCCGACGCGGAAATAGACTATGAACGATACCTGGATCTCCCCTCACCTTCCGAGGAACAAGAGGGAGATGCAAAACCAGATCCTGTGGGTGAATTTAATGCTGTTCCTTTTTCTTATGGAAACTATGAGGATTCTAATGATCAAAAGACTGCCGAGACTGAATCAGAAATCCTTGGATTTCAACCCCCCTTCCCTGTTCCTGACAGCCTGGTTCAGAACTTGCCTCCTACGGAGAAGGTACATCAAATCATTGCGAGGACTGCTCTTTTTGTGAGCAAAAATGGAGGTCAATCAGAAATTATTTTGAGAGTGAAGCAAGGAGACAACCCGACATTTGGATTCTTAATGCCTGATCATCACCTACATCCTTACTACAGATTTCTAGTCGATCACCAGGATGTCCTGCAGTTGAAAGTTGATGGACAGGCCAAAAACGAGGAGAAAACATCCAATAGTGAGAATGATGCAGGGGCTGGAGCATTGTCTTTGCTTGGTTCTGTGTATGGCACTGGTGAGGATGAGGATGGTGGTACAGAGCATGCATCATCACCACCACTACCACCTAAAGAATGTGTATCTGGGAACACTCTGGATGTCGATGCTATGACATCACTTGCAGCAGGGAAAACTATGTTGCCAGCTGGCAAAGATGCACCTGTTTTAAAGCATTCACTTCCTTCCAAGGAAGATGCTCCTAATCTAAAAAGAAATTCGTTAGTAAATGCATTGAAGGCTGGAAGAACAAGTAGTATGAGAAAAGGTGAGTTCTCAGGTTCACTCTCTTCTGATCCAGATAAGTCACGGGCTTCTTCGTTACCTCCAATTCCCAGGACCGAACAAATGCTCCTAGATCCTCCATCTGACATGAAGCTGTTGGTTGAAAAAATAGTGGAGTTTATTATAAAAAATGGGAGGCAGTTTGAGGCAGTACTTATGGAACAAGACCGTGGTCATGGAAGATTTCCTTTCCTAATCCCATCTAATATATTTCATCCATACTATTTAAAAGTTCTCCAGAAAGCTCAGGAGTCGAAATTAACGATCAAGAGTTTCCACAATGAGAAGGAAGATTTCAGAGGACACATCTCAAACAAGAAAAAGTTTCTCCCGAGGGAGAATGACAATAATTTGATGGAATCTGATGATATACCACTTGATTCAGATAGGAAAGAGAAGTTTAAGATGGTAATTAACAAGTCTAAAAAGGAAGGATCAGACGTGCCGGCTAAAGCTACACAACAGCCACCTGTAGTCCAGGTGGATGCTGCGCAAGCAGCCGCCATTCTTCAGGCTGCCACGAGAGGCATTAAAAATCCGAATTTGGGGTTTTTGTTGACAAACAGTAACGGTTATGGGCATGGAAGTGAGGGCGGGCAACCCTCCAATGAAGCCAATTCCTCTGATGCACACTTAACCCATGAACAGAAACTTAAGGCTGAGAGGCTGAAACGGGCTAAGCTGTTTGTGGCTCAATTGAAAAGTGGAGGCGCTACATTGAAAGCCGAAGCCTCACGTGGCTTATCAGCTGAGCCACCAGGATCAGGGGTTGACAACCTAGCTAAAGAAAGAGAGAAGAGTACTACAGCCACTTCAGATATTGATACTTCAGATAATAAATTAAAATCAGAAAAGGAACATTTGAATGAGGAAAGGCGATCAAAGAGGAAATATCGAGCCCGGTCTAGTAGAGATGAAGAAGGTGAATTAGAAGAATTGGAAGAAGAAGATGTTGAGGGTGATGAGAGGGAAGGAAAAAGGTCACATAGACACCGTATGAAAAAGCATCGATCTCGAGATCATTCAGTTGAAGATGAGAGTGAAGAAAAATATGGAGACGAGAAAGATTATAAACATCTAAAGAGAAGGCATCGATCTCATCGTGCTTCTCGTAAACATGATGACAGGGACAGAAGCAAAGAAGGAAGGGATCATGAATATTCAGTGAAGAAGCATCATCGATCTTCTAGTTGTTATGAAGACGAACAAGAAAGTGAAGATGAATATTCCAGAAAGAAGCATCGATCATCACATGATGAGGAGTCTCATGATAGTGAGCATAAATCTTCAAGAAAAAAGCGAAAACACAGATCTCACAAGTCTTCTTCTCATCACAGTAAAGATAGGCATAGGCATAGGCATAGGAAAAGTCACTCCTCTAGGCATAGACACAAGCCCGATTCCTCTTCAGAAGTCGAGCCAAGGGACATCGATAAGCTTAAGAAGGGATCAAACTCGGAAAAAGAAGATTTAGAAGAGGGGGAAATCAGCCCAAAATTATCAGCTTCTTATCAAGATAGAAGACCAGCAACTGATCCACCAGAGGTTCCTGATGATCTCAGGGCCAAAATCAGAGCAATGTTGATGTCTACAATAGAGCCCACGTGCGACTCTTGA 2586 43.58 MNIEICGRHALLFDDDTAAAFVNSDDALVEWNSLLIDRYDVRHLLSSPPPSRRRRNPQTSHSSSADAEIDYERYLDLPSPSEEQEGDAKPDPVGEFNAVPFSYGNYEDSNDQKTAETESEILGFQPPFPVPDSLVQNLPPTEKVHQIIARTALFVSKNGGQSEIILRVKQGDNPTFGFLMPDHHLHPYYRFLVDHQDVLQLKVDGQAKNEEKTSNSENDAGAGALSLLGSVYGTGEDEDGGTEHASSPPLPPKECVSGNTLDVDAMTSLAAGKTMLPAGKDAPVLKHSLPSKEDAPNLKRNSLVNALKAGRTSSMRKGEFSGSLSSDPDKSRASSLPPIPRTEQMLLDPPSDMKLLVEKIVEFIIKNGRQFEAVLMEQDRGHGRFPFLIPSNIFHPYYLKVLQKAQESKLTIKSFHNEKEDFRGHISNKKKFLPRENDNNLMESDDIPLDSDRKEKFKMVINKSKKEGSDVPAKATQQPPVVQVDAAQAAAILQAATRGIKNPNLGFLLTNSNGYGHGSEGGQPSNEANSSDAHLTHEQKLKAERLKRAKLFVAQLKSGGATLKAEASRGLSAEPPGSGVDNLAKEREKSTTATSDIDTSDNKLKSEKEHLNEERRSKRKYRARSSRDEEGELEELEEEDVEGDEREGKRSHRHRMKKHRSRDHSVEDESEEKYGDEKDYKHLKRRHRSHRASRKHDDRDRSKEGRDHEYSVKKHHRSSSCYEDEQESEDEYSRKKHRSSHDEESHDSEHKSSRKKRKHRSHKSSSHHSKDRHRHRHRKSHSSRHRHKPDSSSEVEPRDIDKLKKGSNSEKEDLEEGEISPKLSASYQDRRPATDPPEVPDDLRAKIRAMLMSTIEPTCDS 861
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00825 861 MobiDBLite consensus disorder prediction 51 65 - -
Pdy4g00825 861 Pfam Surp module 146 194 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Pdy4g00825 861 Pfam Surp module 356 403 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Pdy4g00825 861 MobiDBLite consensus disorder prediction 99 118 - -
Pdy4g00825 861 MobiDBLite consensus disorder prediction 45 70 - -
Pdy4g00825 861 SMART DRY-EERY-2 1 107 IPR019147 -
Pdy4g00825 861 Coils Coil 604 624 - -
Pdy4g00825 861 MobiDBLite consensus disorder prediction 316 332 - -
Pdy4g00825 861 ProSiteProfiles SURP motif repeat profile. 356 398 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Pdy4g00825 861 SUPERFAMILY Surp module (SWAP domain) 329 403 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Pdy4g00825 861 MobiDBLite consensus disorder prediction 787 819 - -
Pdy4g00825 861 MobiDBLite consensus disorder prediction 561 844 - -
Pdy4g00825 861 MobiDBLite consensus disorder prediction 516 537 - -
Pdy4g00825 861 SUPERFAMILY Surp module (SWAP domain) 126 194 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Pdy4g00825 861 MobiDBLite consensus disorder prediction 516 532 - -
Pdy4g00825 861 MobiDBLite consensus disorder prediction 581 630 - -
Pdy4g00825 861 MobiDBLite consensus disorder prediction 280 346 - -
Pdy4g00825 861 Gene3D Surp module 140 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Pdy4g00825 861 SMART surpneu2 354 407 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Pdy4g00825 861 SMART surpneu2 145 198 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Pdy4g00825 861 Gene3D Surp module 342 411 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Pdy4g00825 861 MobiDBLite consensus disorder prediction 752 786 - -
Pdy4g00825 861 Pfam Alternative splicing regulator 3 86 IPR019147 -
Pdy4g00825 861 MobiDBLite consensus disorder prediction 230 259 - -
Pdy4g00825 861 MobiDBLite consensus disorder prediction 695 751 - -
Pdy4g00825 861 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 704 IPR040397 GO:0000395(PANTHER)
Pdy4g00825 861 MobiDBLite consensus disorder prediction 661 682 - -
Pdy4g00825 861 ProSiteProfiles SURP motif repeat profile. 147 189 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00825 - -