AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00826 ATGGAATTTAAAGCGCGTGATTACAGAGCTGAGGAAGAGGTCTATTCACTCACCCCAGTTTCAGTGTCTTCGCATCCTCTGTCTCCGTCTCCGTCTCCGTCTCCATCTTCATCCTTCTCACACACGCAGGGTAATGGGCACATCGAATTCTTTGATCCATTAAGGGGGCTATCAACAGAAACCTTGGAGCCTGTTGAAGATATGGCTGTTGCAGAAAAGCATCCTGCTATTCAAGCAACTTCTTATCTATCTACAAAGGAATGGACATCTTTCAATAAGTTATTAATGCAGAAATTTCCTGTGCCAAAAATGATTTCAGTTTCTGCACTGACCAGCAAAACTATAAGGGGCAAGAAAGCAATTGGAGAACTACCAGCAAATATGCAGTCAGATGAACTGAATGATTCTCCAAAGTTGACTGAAGGAGGATTTAAGAGTGTAAGCCAGCAGGAGTATATCAAACGATTGCACGAGCTTAAAGATGAGATCATGCGTTCTTGGCTCTCTGATGATCGTGTAACAGCTCTAAAATTGTCAATAAAGGTTGCTAGGCTTCTGATGGACACCTCTGTGGCACAATTTTATCCAACGTTGTTTGTTCTAGCTACTGATATAATGGACATGCTAGGCAATATGGTATGGAAGCGGATTAAGGAGAAAGCTGAGTTTGCAGATGATGGGACCAATATATACACTTTATCAGATAATTTTGAGGCAAATAATATATGTCTTGAAGCCAAAGAGACATGCAGTAACTGGTTCAGAAAAATTGCTTCCATCCATGAGCTTCTTCCACGCATCTATCTCGAGCTTGCTATATTTCCATGCTGGCGGTTCCTGCATGATGATGTCAATGATAACCTCATGCGCTTGGGTATGATGATAAGAGGTATAGCAGATCCATTGGCTTCAGCCTACTGTCGCTTGTTTTTGCTTCACTGCGCCCAGAAACTTCCCCAGTGCGATACAGGGCATATGATAACATGCGTCAATGACCAAAAAACTGTACTTACGCGAATTGTATCTTTGAAAGAGACCAAGTATGGGAACTTTTTGGGAGATCACAAGTTGCTTATCAGCTTGATGGAACCAACAATAGAGTATACTATGAGATGCATTTTTAAGGATCCAAACCAGGTTGTTGATATGATTGTGAGACTTGGATTAGGGAAGAATTCATTAGAGTTATACGGAAAAGTTTCTTGGATATCAATAATACTTCATTATTTAATTAAGGAGCTTCCAACTGAAGTAGTATGTGCCAATGCTGTAGAGATTCTTCGACTTGTTGACTGCAGCTGTGATTTTTCATTTGACCAGTGTTTAAATTACAAGATGCTCGGGTTGAAGCTTTGTGAGGGAATATCTCAAGTGAACACATTAGACACAGTTATTGATGAAGTAATGCAGGTTGCTACCAAAAGAAAGGGCCTTGATGAGTACTTGAAGATCTTGGATGCTTATATGGATATTATTCTTCAATATCATGTCGATCAATATCTAAGCTCTGTTCTTAGTGAAATATGTGAACGATTGTGCAATGAAGTGGTTACTGAAGATGAACTGGGTAGCCTGCAATCAATTGTTGTGAAGCTTGTCACACATTTTGATGATATGAAATATGTTTTTGACCTGAATTATTTTGTTGACATATTGGATGTCATGTATGGGAGCTCACGAAGCATTGTGAGTATGCACATCCTTACTAATGCCACAAGAGACAATCGCATTGATGATCCAACCACGATAAAACTACTTTTTGATGTTGCTCAGTCTCTGCATGATAGTGTTGACTTTTCAAGCACGAGACAGGATGATAATCAACAGGCAGAGCGTTTGATCGCTCGTTTTGTTGATAAGGTTGACCATGGTACGGAGTTAGATCGCCATCTAACATTCTTGGTCGAGTGTCGAGGAGCTTTCAGTAGCATGAATGATTTGAAGGAGATCCTTGTTCATTCAAGCAATCTTTTAGCAACCAGAGCTTTGAGAGATCAAAAAGATAATATCAATTTTATCAAATCTTGCATCACTTTTAATGAAATTACAATACCATGTATTCCATCTTATTCCAGGCAGTTAATTCTATATCTTGAAACTGCAGAGGTTTCTCTGTTTGGAGGCTTGACTTCTCATTCAGATGGACTTCTAGATTCTGCAGTCTGCTGCTTACAAGAAGTTCACGTGGTAGATGGCTTGCGGAAATCCAATGAAGATGCTGATTGTATTGTTTCATTAATAAGAAAGCTGTGCGGTTTCATGCTTTTGGTTCCAGGTAATTTGGAACGAGGAGTTATGTACATTCCCAAGAGCATATTATCCTTGCTTGATAAACAATCATGGATTACACCAAAACTAAGGATACGGATCTTATGTTCTCTTCTTTCATTATCTGCAACATTTGCTCAAAATGATCTCCCGTACCATGCAATTCATGAAGAGGTTATTGGCAATGATCGTTTATTCTTTGGTCATGAAATGTATTCCCAAGAACTTGGGTCGTTATCTAGTGTTATTCTTCGTAACATGGTTGATACCATTCCACAAGAACCTTCACAGACCACACGAGGAAAATTGGCACTTGAAGCTTGCAACTGCATCGCCTTGTTTTTTGAAGTGAAGAACGAGATATCGTCAGTATGCTCTAATTTGGTGGAAACCGCCATATCATGTCTTGGAGCTGATGACAAATACTTGCTGTCTACAGTTAATTTTGTGCATAAACAGACCCCAGTATCTGTTGGGGGAGAATGA 2754 39.62 MEFKARDYRAEEEVYSLTPVSVSSHPLSPSPSPSPSSSFSHTQGNGHIEFFDPLRGLSTETLEPVEDMAVAEKHPAIQATSYLSTKEWTSFNKLLMQKFPVPKMISVSALTSKTIRGKKAIGELPANMQSDELNDSPKLTEGGFKSVSQQEYIKRLHELKDEIMRSWLSDDRVTALKLSIKVARLLMDTSVAQFYPTLFVLATDIMDMLGNMVWKRIKEKAEFADDGTNIYTLSDNFEANNICLEAKETCSNWFRKIASIHELLPRIYLELAIFPCWRFLHDDVNDNLMRLGMMIRGIADPLASAYCRLFLLHCAQKLPQCDTGHMITCVNDQKTVLTRIVSLKETKYGNFLGDHKLLISLMEPTIEYTMRCIFKDPNQVVDMIVRLGLGKNSLELYGKVSWISIILHYLIKELPTEVVCANAVEILRLVDCSCDFSFDQCLNYKMLGLKLCEGISQVNTLDTVIDEVMQVATKRKGLDEYLKILDAYMDIILQYHVDQYLSSVLSEICERLCNEVVTEDELGSLQSIVVKLVTHFDDMKYVFDLNYFVDILDVMYGSSRSIVSMHILTNATRDNRIDDPTTIKLLFDVAQSLHDSVDFSSTRQDDNQQAERLIARFVDKVDHGTELDRHLTFLVECRGAFSSMNDLKEILVHSSNLLATRALRDQKDNINFIKSCITFNEITIPCIPSYSRQLILYLETAEVSLFGGLTSHSDGLLDSAVCCLQEVHVVDGLRKSNEDADCIVSLIRKLCGFMLLVPGNLERGVMYIPKSILSLLDKQSWITPKLRIRILCSLLSLSATFAQNDLPYHAIHEEVIGNDRLFFGHEMYSQELGSLSSVILRNMVDTIPQEPSQTTRGKLALEACNCIALFFEVKNEISSVCSNLVETAISCLGADDKYLLSTVNFVHKQTPVSVGGE 917
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00826 917 MobiDBLite consensus disorder prediction 18 45 - -
Pdy4g00826 917 PANTHER ESOPHAGEAL CANCER ASSOCIATED PROTEIN 2 909 IPR029705 GO:0005768(PANTHER)|GO:0032456(PANTHER)|GO:0032456(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00826 K25731 VPS35 endosomal protein-sorting factor-like