AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00833 ATGGACAGCGGAGCGGCGAAGACGGTGGTGCATCCAGCAGTCGAATCTCTGTCATATCTTATCGGAACTTGGAGAGGTCAAGGAGAAGGTGGTTTCCCCACCATATCCTCCTTCGCTTACGGCGAAGAACTCAATTTCACTCACCCCGGAAACAAGCCAGTAATAGCTTATTCTCAGAAGACTTGGAAACTGAGTTCTGGAGAGCCAATGCATGCTGAGAGCGGCTATTGGAGGCCAAAGCCTGATGGAACAATTGAGGTCGTCATCGCACAAAGCACTGGTCTTGTTGAAGTTCAGAATGGAACTTATGATGCAGACAAGAAAGTGGTGAAGCTTCAGAGTGAGCTTGTTGGAAACGCTTCAAAGGTTAAAGAGATATCTCGAGTTTTCACTCTGGTTAATGAAGAATTATCTTACGTGGTTGAGATGGCTACCAATGTCACCACTCGTCAGCCACATCTGAAGGCGTCACTTAAAAAGCTCTGA 486 46.91 MDSGAAKTVVHPAVESLSYLIGTWRGQGEGGFPTISSFAYGEELNFTHPGNKPVIAYSQKTWKLSSGEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQNGTYDADKKVVKLQSELVGNASKVKEISRVFTLVNEELSYVVEMATNVTTRQPHLKASLKKL 161
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00833 161 SUPERFAMILY Lipocalins 10 160 IPR012674 -
Pdy4g00833 161 Gene3D - 9 161 IPR012674 -
Pdy4g00833 161 Pfam THAP4-like, heme-binding beta-barrel domain 14 160 IPR014878 -
Pdy4g00833 161 PANTHER THAP4 PROTEIN 5 161 IPR045165 -
Pdy4g00833 161 CDD lipocalin-heme-bd-THAP4-like 14 160 IPR014878 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00833 K23205 THAP domain-containing protein 4
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:14760859 Pdy4g00835 Pdy-Chr4:14799278 proximal