AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pdy4g00834 | ATGAGCACTCAGACAGCAAGTGTTGTCACTCGGCTCAGGAATTGTGGGTTATTACGAACCAAAGGTCTTATTGGCGGGAAATGGACTCAAGCATATGATGGGAGGACGATGAACGTTAACAACCCTGCTAGTGGCGAAGTTATAGCTTCAGTGGCATGCATGGGTGAGAGGGAAACGAAGGATGCCATTTCTGCAGCTTCTGATGCTTTTAGCCATTGGAGCAGGCTTACTGCTGCTGACAGAAGTATTCGCCTGCGTAATTGGTATAACTTGCTGATTGCACATAAACAAGAGCTTGGACAACTTATAACTCTGGAGCAAGGAAAACCTATAAAGGAAGCCATTGAGGAGGTCGGGTATGGGTCTAGTTTTGTCGAGTTCTTTGCAGAGGAGGCAAAACGTGTTTATGGCGATATAATTCCATCACCACTGCGTGATAGCCGTTTGTTTGTTCTGAAACAGCCTGTTGGTGTGGTTGGTGCAATAACTCCATGGAATTTCCCCTTCGCGATGATTACTCGTAAGGTTGGCCCTGCACTTGCTTGTGGGTGTAGTGTGGTCATAAAGCCGTCTGAGCTCACACCATTAACCGCCTTAGCAACAGCTGAGCTTGCCATTCAAGCTGGAATCCCTCCAGGCGTATTGAATGTGGTCATGGGAGATGCTCCTAGTATCGGAAATTCTCTACTTGAGAGCCTACAGGTAAGGAAGTTAACATTTACTGGTTCAACAGCTGTTGGTAAGAAACTAATGGCTGGTGCATCAAAGACTGTTAAGAAGGTTTCTCTAGAGCTTGGTGGCAATGCACCTTGCATAATCTTCGACGATGCTGACCTAGAAGTGACAGTGAAGCAGACCTTGATAAGTAAATTCGGTAACGCTGGACAAGAGTGTGTATGCACAAATAGACTACTTGTGCAAGAAGGCATATATGATAAGTTCATAAATGCCTTCTCAACTGCTGTTCAGAACATTAGAGTTGGCAATGGTTTTACTGAAGGTGTGACCCAGGGCCCACTTATCAATGAAGCTGCTGTGCAGAAGGTTGATTCATTTGTGCAGGATGCTATTTCAAAGGGAGCAAAAGTTCTTGTGGGTGGTAAGAGGCATAGCCTTGGCATGACTTTTTATGAACCCACAATTCTGAGTGATGTAAACACTGAGATGCTCATAGCAAGGCAAGAAATATTTGGTCCTGTTGCACCTATCATTCGGTTTAAAACCGAGGAAGAAGCAATACAGATTGCTAATGACACTAATTCAGGATTAGTTGCTTACGTATTCACAAACAGTATGCAACGTTCATGGCGTTTGTCTGAAGCTCTAGAGTATGGTATGGTTGGAGTCAATGAGGGATGGATTCATACAGAGGTGGCTCCATTTGGAGGTTCCAAGGAGTCGGGTCTGGGACGGGAAGGTTCCAAATATGGATTGGATGATTATCTTGAAATCAAGTACGTTTGTATGGGAAACATGGGCTGA | 1482 | 44.74 | MSTQTASVVTRLRNCGLLRTKGLIGGKWTQAYDGRTMNVNNPASGEVIASVACMGERETKDAISAASDAFSHWSRLTAADRSIRLRNWYNLLIAHKQELGQLITLEQGKPIKEAIEEVGYGSSFVEFFAEEAKRVYGDIIPSPLRDSRLFVLKQPVGVVGAITPWNFPFAMITRKVGPALACGCSVVIKPSELTPLTALATAELAIQAGIPPGVLNVVMGDAPSIGNSLLESLQVRKLTFTGSTAVGKKLMAGASKTVKKVSLELGGNAPCIIFDDADLEVTVKQTLISKFGNAGQECVCTNRLLVQEGIYDKFINAFSTAVQNIRVGNGFTEGVTQGPLINEAAVQKVDSFVQDAISKGAKVLVGGKRHSLGMTFYEPTILSDVNTEMLIARQEIFGPVAPIIRFKTEEEAIQIANDTNSGLVAYVFTNSMQRSWRLSEALEYGMVGVNEGWIHTEVAPFGGSKESGLGREGSKYGLDDYLEIKYVCMGNMG | 493 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pdy4g00834 | 493 | FunFam | Succinate-semialdehyde dehydrogenase I | 34 | 279 | - | - | |
| Pdy4g00834 | 493 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 263 | 270 | IPR029510 | GO:0016491(InterPro) | |
| Pdy4g00834 | 493 | Pfam | Aldehyde dehydrogenase family | 28 | 487 | IPR015590 | GO:0016491(InterPro) | |
| Pdy4g00834 | 493 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 267 | 456 | IPR016163 | GO:0016620(InterPro) | |
| Pdy4g00834 | 493 | CDD | ALDH-F5-SSADH-GabD | 39 | 489 | - | - | |
| Pdy4g00834 | 493 | NCBIfam | succinate-semialdehyde dehydrogenase | 39 | 485 | IPR010102 | GO:0009013(InterPro)|GO:0009450(InterPro) | |
| Pdy4g00834 | 493 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 12 | 492 | IPR050740 | GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER) | |
| Pdy4g00834 | 493 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 291 | 302 | IPR016160 | GO:0016491(InterPro) | |
| Pdy4g00834 | 493 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 34 | 481 | IPR016162 | GO:0016491(InterPro) | |
| Pdy4g00834 | 493 | SUPERFAMILY | ALDH-like | 13 | 491 | IPR016161 | GO:0016491(InterPro) | |
| Pdy4g00834 | 493 | FunFam | Succinate-semialdehyde dehydrogenase I | 267 | 456 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pdy4g00834 | K17761 | succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] | ||||
| Pdy4g00834 | K00135 | succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pdy | Pdy-Chr4:14762696 | Pdy4g00840 | Pdy-Chr4:14883347 | dispersed | |
| Pdy | Pdy-Chr4:14762696 | Pdy4g00838 | Pdy-Chr4:14843382 | proximal |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Pdy2g03288 | . | 1 | 545 | Aldehyde Dehydrogenase gene family | AT3G66658 | 80.55 | 0.0 | 931.0 | |
| Pdy2g03944 | ACH | 4 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 53.958 | 0.0 | 560.0 | |
| Pdy2g03946 | . | 201 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 55.477 | 8.13e-116 | 340.0 | |
| Pdy3g00002 | . | 43 | 83 | Aldehyde Dehydrogenase gene family | AT3G48000 | 56.098 | 9.62e-10 | 51.2 | |
| Pdy3g00766 | ACH | 1 | 501 | Aldehyde Dehydrogenase gene family | AT1G74920 | 78.842 | 0.0 | 847.0 | |
| Pdy3g01362 | . | 6 | 482 | Aldehyde Dehydrogenase gene family | AT1G44170 | 65.618 | 0.0 | 671.0 | |
| Pdy4g00010 | ACH | 75 | 607 | Aldehyde Dehydrogenase gene family | AT2G14170 | 80.935 | 0.0 | 891.0 | |
| Pdy4g00834 | . | 34 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 74.187 | 0.0 | 760.0 | |
| Pdy4g00838 | . | 34 | 228 | Aldehyde Dehydrogenase gene family | AT1G79440 | 70.256 | 2.39e-96 | 289.0 | |
| Pdy4g00839 | . | 34 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 73.577 | 0.0 | 758.0 | |
| Pdy4g00840 | . | 34 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 74.593 | 0.0 | 779.0 | |
| Pdy4g00841 | . | 1 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 74.44 | 0.0 | 810.0 | |
| Pdy4g02485 | ACH | 13 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.916 | 0.0 | 713.0 | |
| Pdy5g01235 | . | 7 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 79.091 | 0.0 | 937.0 | |
| Pdy6g02731 | . | 8 | 484 | Aldehyde Dehydrogenase gene family | AT4G36250 | 61.426 | 0.0 | 627.0 | |
| Pdy6g03234 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 80.591 | 0.0 | 908.0 | |
| Pdy6g03259 | ACH | 1 | 501 | Aldehyde Dehydrogenase gene family | AT1G74920 | 78.244 | 0.0 | 860.0 | |
| Pdy6g03308 | . | 15 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 78.085 | 0.0 | 916.0 | |
| Pdy7g01406 | ACH | 84 | 602 | Aldehyde Dehydrogenase gene family | AT2G14170 | 67.946 | 0.0 | 737.0 | |
| Pdy7g01580 | . | 16 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 62.757 | 0.0 | 649.0 | |
| Pdy7g02359 | ACH | 3 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 69.138 | 0.0 | 719.0 | |
| Pdy8g02314 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 76.394 | 0.0 | 884.0 | |
| Pdy8g02544 | ACH | 1 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 56.315 | 0.0 | 581.0 | |
| Pdy9g00647 | . | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 88.911 | 0.0 | 927.0 | |
| Pdy9g02516 | . | 5 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 86.179 | 0.0 | 909.0 |