AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00853 ATGGCTTTCTCGTCTCTTCTCCGGTCGGCTAACCCGCCACCTGTTCTTGAAGCATCCCGTCAATCCCTCTGCGCTCCTTCTTTCGCTACTCGATCATCGCTTACGCTTCAATCCACCCTCTTTGGTTCTGCCGTTTCTCGGGACTCTTCGTCTTTACAGACTTCTCACGCAAGAAGTATCCATCCAATTAAAGCCACTGCTACTCAGATACCTCCTGCTGTTCAAAAGTCCAGTACTGGTGGGAAGACCAAGGTCGGAATCAATGGTTTTGGAAGGATTGGAAGGTTGGTATTGAGAATAGCAACATCTAGGGATGATATCGAGGTTGTTGCTGTCAACGACCCTTTTATTGATTCGAAGTACATGGCTTACATGTTGAAGTATGATTCTACTCATGGGCTGTTTAATGGAACCATCAAGGTTGTTGATGAGTCCACTTTGGAAATAAATGGGAAGCAAATAAAAGTAACTAGCCAAAGAGACCCAGCAGTGATTCCTTGGGGTGATTTTGGAGCCGATTATGTTGTAGAATCTTCTGGGGTTTTTACAACACTTGATAAGGCTTCAGCACACATCAAGGGTGGCGCGAAGAAGGTGGTGATCTCGGCTCCATCAGCAGATGCCCCTATGTTTGTTGTAGGAGTTAATGAGACTACATATAAGCCAAACATGGATGTTGTATCCAATGCTAGCTGCACCACTAACTGCTTGGCTCCTTTGGCCAAGGTGGTTCATGAGGAGTTTGGTATTGTTGAGGGTTTGATGACAACTGTGCATGCAACCACAGCTACCCAGAAAACTGTGGATGGACCTTCAATGAAGGATTGGCGTGGAGGTCGTGGTGCCGCACAAAACATCATCCCTAGTTCAACTGGTGCTGCCAAGGCTGTAGGGAAGGTGTTACCAGAACTAAATGGGAAACTCACTGGCATGGCCTTTAGAGTCCCTACAGCAAACGTTTCTGTTGTGGATTTAACTTGTCGACTTGAGAAGAGTGCTTCTTATGAAGATGTTAAAGCTGCAATAAAGTATGCCTCTGAGGGTCCCCTGCAAGGAATTCTTGGGTACACGGATGAGGATGTTGTCTCGAATGACTTTGTTGGTGACTCCAGGTCAAGCATCTTTGATGCAAAGGCCGGAATAGGTCTAAGTGCATCATTTGTGAAACTGGTATCGTGGTATGACAACGAGTGGGGTTACAGCAACCGGGTGTTGGACCTGATAGAGCATATGGCATTGGTGGCAGCTTCCAACTGA 1257 46.54 MAFSSLLRSANPPPVLEASRQSLCAPSFATRSSLTLQSTLFGSAVSRDSSSLQTSHARSIHPIKATATQIPPAVQKSSTGGKTKVGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDSKYMAYMLKYDSTHGLFNGTIKVVDESTLEINGKQIKVTSQRDPAVIPWGDFGADYVVESSGVFTTLDKASAHIKGGAKKVVISAPSADAPMFVVGVNETTYKPNMDVVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTANVSVVDLTCRLEKSASYEDVKAAIKYASEGPLQGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFVKLVSWYDNEWGYSNRVLDLIEHMALVAASN 418
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00853 418 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 84 184 IPR020828 GO:0051287(InterPro)
Pdy4g00853 418 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 84 406 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Pdy4g00853 418 SMART gp-dh-n-7 83 232 IPR020828 GO:0051287(InterPro)
Pdy4g00853 418 FunFam Glyceraldehyde-3-phosphate dehydrogenase 231 396 - -
Pdy4g00853 418 FunFam Glyceraldehyde-3-phosphate dehydrogenase 83 242 - -
Pdy4g00853 418 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 82 248 IPR036291 -
Pdy4g00853 418 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 231 394 - -
Pdy4g00853 418 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 230 237 IPR020830 GO:0016620(InterPro)
Pdy4g00853 418 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 310 327 IPR020831 GO:0016620(InterPro)
Pdy4g00853 418 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 191 204 IPR020831 GO:0016620(InterPro)
Pdy4g00853 418 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 226 244 IPR020831 GO:0016620(InterPro)
Pdy4g00853 418 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 350 365 IPR020831 GO:0016620(InterPro)
Pdy4g00853 418 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 253 269 IPR020831 GO:0016620(InterPro)
Pdy4g00853 418 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 237 394 IPR020829 GO:0016620(InterPro)
Pdy4g00853 418 Gene3D Dihydrodipicolinate Reductase; domain 2 232 398 - -
Pdy4g00853 418 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 78 412 IPR020831 GO:0016620(InterPro)
Pdy4g00853 418 Gene3D - 84 411 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00853 K00134 glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:15522081 Pdy6g03363 Pdy-Chr6:76130953 dispersed
Pdy Pdy-Chr4:15513446 Pdy4g00853 Pdy-Chr4:15522081 tandem