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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00859 ATGGCATCCGCCTTTCTTTCAAGAACACTCTTGGCACATCGCTTCGTTTCATCGTTCGCAATCAATCAAAATCCACGACAATTAGCTTCCGTTTTCCTTAAGAGACCCTCCCTTCATTCGTGGGCTACCCCTGCATATAGGAGGTCTACCTTAGTTCGTTCTGATATGAGTTCCACCGTGGCTGGATCTACAGCTTCTTTCTCAACACAGTCTGTGTCGACTAAAGAGCCCGTTGTTTCAGTTGACTGGCTCCATGCAAATCTGCGTGAGCCTGATATGAAGGTGTTGGATGCATCCTGGTACATGCCTGATGAACAGAGAAACCCACTTCAAGAGTATCAGGTTGCACACATACCTGGTGCTCTTTTCTTTGACGTGGATGGGATATCAGATCGTGCTACTAATCTGCCACACATGCTGCCATCTGAGGAAGCATTTGCTGCTGCTGTATCTGCACTTGGTATTGAAAACAAAGATGGAGTTGTTGTTTATGATGGTAAAGGCATATTCAGTGCAGCCCGTGTCTGGTGGATGTTTCGAGTTTTTGGACATGATAGAGTGTGGGTATTAGATGGAGGCCTTCCCAGATGGCGTGCTTCAGGATTTGATGTTGAATCTAGTGCTTCAAGTGATGCAATATTGAAAGCTAGTGCTGCTAGCGAGGCTATAGAGAAAGTATACCAGGGACAGCCTGTTGGTCCAGTTACATTTCATACAAATTATCAGCCCCATCTTGTATGGACACTTGAACAGGTTAAAAAGAACATGGAAGACCAATCACATCAACACATAGATGCTCGGTCAAAAGCCAGGTTTGACGGTGTTGCAGCTGAGCCTCGAAAAGGAATAAGAAGTGGCCATGTGCCTGGGAGTAAGTGCATTCCTTTTACCCAGATGTTAGACAGCTCACAGACACTGCTATCAGCAGAGCAGCTCAAGAAAAAGTTTGAACAAGAGGGAATCTCATTGGACAGTCCTGTTATGACTTCATGCGGGACCGGAGTTACTGCATGCATTCTTGCATTGGGACTTCACCGACTAGGGAAGACAGACGTTCCAGTGTATGATGGATCTTGGACAGAATGGGGAGCACAAGAGGATACTCCCGTCTCAACTTCAGGTTCTTGA 1128 46.1 MASAFLSRTLLAHRFVSSFAINQNPRQLASVFLKRPSLHSWATPAYRRSTLVRSDMSSTVAGSTASFSTQSVSTKEPVVSVDWLHANLREPDMKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDRATNLPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGFDVESSASSDAILKASAASEAIEKVYQGQPVGPVTFHTNYQPHLVWTLEQVKKNMEDQSHQHIDARSKARFDGVAAEPRKGIRSGHVPGSKCIPFTQMLDSSQTLLSAEQLKKKFEQEGISLDSPVMTSCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGAQEDTPVSTSGS 375
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00859 375 FunFam Sulfurtransferase 242 373 - -
Pdy4g00859 375 ProSitePatterns Rhodanese C-terminal signature. 352 362 IPR001307 GO:0004792(InterPro)
Pdy4g00859 375 CDD TST-Repeat-1 78 201 - -
Pdy4g00859 375 Gene3D - 71 213 IPR036873 -
Pdy4g00859 375 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 76 208 IPR036873 -
Pdy4g00859 375 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 250 372 IPR036873 -
Pdy4g00859 375 PANTHER THIOSULFATE SULFERTANSFERASE 74 373 IPR045078 GO:0004792(PANTHER)|GO:0005739(PANTHER)|GO:0016783(InterPro)
Pdy4g00859 375 Pfam Rhodanese-like domain 248 364 IPR001763 -
Pdy4g00859 375 Pfam Rhodanese-like domain 80 199 IPR001763 -
Pdy4g00859 375 SMART rhod-4 247 368 IPR001763 -
Pdy4g00859 375 SMART rhod-4 79 203 IPR001763 -
Pdy4g00859 375 Gene3D - 242 372 IPR036873 -
Pdy4g00859 375 FunFam Sulfurtransferase 71 213 - -
Pdy4g00859 375 CDD TST-Repeat-2 248 364 - -
Pdy4g00859 375 ProSitePatterns Rhodanese signature 1. 113 124 IPR001307 GO:0004792(InterPro)
Pdy4g00859 375 ProSiteProfiles Rhodanese domain profile. 89 206 IPR001763 -
Pdy4g00859 375 ProSiteProfiles Rhodanese domain profile. 257 371 IPR001763 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00859 K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pdy1g02329 . 7 198 Sulfurtransferasese/Rhodanese gene family AT3G08920 56.5 1.61e-78 233.0
Pdy1g04120 . 1 222 Sulfurtransferasese/Rhodanese gene family AT4G27700 65.678 6.65e-107 306.0
Pdy2g03495 . 17 145 Sulfurtransferasese/Rhodanese gene family AT5G03455 65.891 2.25e-62 186.0
Pdy2g04224 . 136 348 Sulfurtransferasese/Rhodanese gene family AT5G23060 30.233 1.30e-20 92.4
Pdy3g00397 . 1 464 Sulfurtransferasese/Rhodanese gene family AT5G55130 69.574 0.0 667.0
Pdy3g00648 . 72 261 Sulfurtransferasese/Rhodanese gene family AT5G55130 24.424 8.95e-11 61.6
Pdy3g02257 . 46 216 Sulfurtransferasese/Rhodanese gene family AT5G55130 30.645 1.55e-14 73.6
Pdy3g02378 . 45 181 Sulfurtransferasese/Rhodanese gene family AT4G35770 59.854 1.83e-55 172.0
Pdy3g02803 . 342 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 31.004 1.26e-17 79.7
Pdy4g00859 . 1 374 Sulfurtransferasese/Rhodanese gene family AT1G79230 73.615 0.0 577.0
Pdy4g01212 . 16 581 Sulfurtransferasese/Rhodanese gene family AT1G09280 67.182 0.0 783.0
Pdy5g00411 . 1 292 Sulfurtransferasese/Rhodanese gene family AT4G24750 64.883 5.83e-140 394.0
Pdy5g01142 . 96 179 Sulfurtransferasese/Rhodanese gene family AT5G19370 34.021 2.53e-08 49.3
Pdy5g02525 . 82 242 Sulfurtransferasese/Rhodanese gene family AT4G01050 43.478 4.16e-32 123.0
Pdy5g02665 . 352 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 30.594 2.09e-14 71.6
Pdy5g02898 . 1 230 Sulfurtransferasese/Rhodanese gene family AT2G42220 65.517 9.21e-111 316.0
Pdy6g00362 . 34 438 Sulfurtransferasese/Rhodanese gene family AT1G17850 59.005 1.79e-176 499.0
Pdy6g00809 . 95 455 Sulfurtransferasese/Rhodanese gene family AT2G40760 77.008 0.0 578.0
Pdy6g03062 . 10 383 Sulfurtransferasese/Rhodanese gene family AT5G23060 63.733 2.80e-167 471.0
Pdy7g00179 . 94 299 Sulfurtransferasese/Rhodanese gene family AT5G19370 67.788 1.00e-105 308.0
Pdy8g01675 . 352 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 28.889 5.82e-17 77.0
Pdy8g01887 . 24 147 Sulfurtransferasese/Rhodanese gene family AT2G17850 55.2 2.11e-42 141.0
Pdy9g03278 . 1 456 Sulfurtransferasese/Rhodanese gene family AT4G01050 52.903 1.78e-140 408.0